Variant report

Variant	rs73774352
Chromosome Location	chr5:95987949-95987950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95982894..95985844-chr5:95986836..95989729,2	MCF-7	breast:
2	chr5:95987202..95990491-chr5:95996534..96000051,5	MCF-7	breast:
3	chr5:95976037..95979831-chr5:95983868..95989174,6	MCF-7	breast:
4	chr5:95987307..95988959-chr5:96004331..96007033,2	K562	blood:
5	chr5:95975136..95978102-chr5:95987198..95988940,2	MCF-7	breast:
6	chr5:95985902..95988959-chr5:96004331..96007887,4	K562	blood:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs28613847	1.00[AMR][1000 genomes]
rs56255433	1.00[AMR][1000 genomes]
rs56299553	1.00[AMR][1000 genomes]
rs56843965	1.00[AMR][1000 genomes]
rs58106243	1.00[AMR][1000 genomes]
rs59848421	1.00[AMR][1000 genomes]
rs61327006	1.00[AMR][1000 genomes]
rs61669951	1.00[AMR][1000 genomes]
rs73774354	1.00[AMR][1000 genomes]
rs73774360	1.00[AMR][1000 genomes]
rs73774361	1.00[AMR][1000 genomes]
rs73774362	1.00[AMR][1000 genomes]
rs73774364	1.00[AMR][1000 genomes]
rs73774367	1.00[AMR][1000 genomes]
rs73774369	1.00[AMR][1000 genomes]
rs73774375	1.00[AMR][1000 genomes]
rs73774385	1.00[AMR][1000 genomes]
rs73774386	1.00[AMR][1000 genomes]
rs73774388	1.00[AMR][1000 genomes]
rs73774389	1.00[AMR][1000 genomes]
rs73774390	1.00[AMR][1000 genomes]
rs73774391	1.00[AMR][1000 genomes]
rs73774392	1.00[AMR][1000 genomes]
rs73774393	1.00[AMR][1000 genomes]
rs73774397	1.00[AMR][1000 genomes]
rs73774399	1.00[AMR][1000 genomes]
rs73774400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95980800-95988200	Weak transcription	Placenta	Placenta
2	chr5:95982800-95989600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:95983200-95994200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:95983800-95990800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:95984400-95989200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:95984600-95988200	Weak transcription	Esophagus	oesophagus
7	chr5:95984800-95989400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr5:95984800-95991000	Weak transcription	Psoas Muscle	Psoas
9	chr5:95984800-95991400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:95985200-95988400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:95985400-95992000	Weak transcription	Pancreas	Pancrea
12	chr5:95985600-95990200	Weak transcription	A549	lung
13	chr5:95986000-95988200	Weak transcription	HMEC	breast
14	chr5:95986000-95990800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:95986000-95990800	Weak transcription	Osteobl	bone
16	chr5:95986000-95991000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:95986000-95991000	Weak transcription	Liver	Liver
18	chr5:95986200-95988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:95986200-95988200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:95986200-95988200	Weak transcription	Hela-S3	cervix
21	chr5:95986200-95988200	Weak transcription	NHLF	lung
22	chr5:95986200-95988400	Weak transcription	Fetal Lung	lung
23	chr5:95986200-95988400	Weak transcription	NH-A	brain
24	chr5:95986200-95988400	Weak transcription	NHEK	skin
25	chr5:95986200-95988600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:95986200-95990200	Weak transcription	HSMM	muscle
27	chr5:95986200-95990800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:95986200-95992000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:95986200-95992000	Weak transcription	Fetal Intestine Small	intestine
30	chr5:95986200-95992000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:95986400-95991000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:95986600-95988400	Weak transcription	NHDF-Ad	bronchial
33	chr5:95986600-95991000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:95986600-95992000	Weak transcription	Fetal Intestine Large	intestine
35	chr5:95987200-95988400	Weak transcription	Fetal Kidney	kidney
36	chr5:95987400-95990800	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:95987600-95988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:95987600-95989400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr5:95987800-95989200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:95987800-95989400	Enhancers	HUES48 Cell Line	embryonic stem cell

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