Variant report

Variant	rs73774386
Chromosome Location	chr5:96023677-96023678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95949438..95951808-chr5:96023239..96024214,15	MCF-7	breast:
2	chr5:95945459..95947691-chr5:96021783..96024653,2	MCF-7	breast:
3	chr5:95949549..95950328-chr5:96023131..96023820,3	K562	blood:
4	chr5:95949821..95950593-chr5:96023220..96024010,2	MCF-7	breast:
5	chr5:95680318..95681085-chr5:96023274..96024265,2	K562	blood:
6	chr5:96022353..96024017-chr5:96034115..96036407,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs28613847	1.00[AMR][1000 genomes]
rs56255433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56299553	1.00[AMR][1000 genomes]
rs56843965	1.00[AMR][1000 genomes]
rs58106243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59848421	1.00[AMR][1000 genomes]
rs61327006	1.00[AMR][1000 genomes]
rs61669951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774352	1.00[AMR][1000 genomes]
rs73774354	1.00[AMR][1000 genomes]
rs73774360	1.00[AMR][1000 genomes]
rs73774361	1.00[AMR][1000 genomes]
rs73774362	1.00[AMR][1000 genomes]
rs73774364	1.00[AMR][1000 genomes]
rs73774367	1.00[AMR][1000 genomes]
rs73774369	1.00[AMR][1000 genomes]
rs73774375	1.00[AMR][1000 genomes]
rs73774385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774391	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774397	1.00[AMR][1000 genomes]
rs73774399	1.00[AMR][1000 genomes]
rs73774400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95999400-96038000	Weak transcription	Fetal Stomach	stomach
2	chr5:95999600-96026000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:95999600-96028200	Weak transcription	Aorta	Aorta
4	chr5:95999600-96037800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:95999600-96038000	Weak transcription	Fetal Lung	lung
6	chr5:95999800-96024600	Weak transcription	Fetal Heart	heart
7	chr5:96000800-96037600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:96001600-96037000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:96002400-96027800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:96002400-96037600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:96002400-96038200	Weak transcription	Esophagus	oesophagus
12	chr5:96004800-96028200	Weak transcription	Lung	lung
13	chr5:96004800-96036600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:96005000-96038000	Weak transcription	Ovary	ovary
15	chr5:96005000-96038200	Weak transcription	Gastric	stomach
16	chr5:96005600-96027800	Weak transcription	Left Ventricle	heart
17	chr5:96007400-96025400	Weak transcription	Pancreas	Pancrea
18	chr5:96007600-96027800	Weak transcription	Fetal Intestine Large	intestine
19	chr5:96009200-96037600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:96012000-96026400	Weak transcription	NHLF	lung
21	chr5:96013000-96037800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:96013600-96031400	Weak transcription	Stomach Mucosa	stomach
23	chr5:96013800-96037600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:96014000-96030800	Weak transcription	HSMM	muscle
25	chr5:96014800-96027400	Weak transcription	Fetal Intestine Small	intestine
26	chr5:96015400-96031800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr5:96016200-96031600	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:96016600-96035200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:96016800-96027200	Weak transcription	Adipose Nuclei	Adipose
30	chr5:96016800-96027200	Weak transcription	HSMMtube	muscle
31	chr5:96016800-96027800	Weak transcription	Right Atrium	heart
32	chr5:96016800-96035000	Weak transcription	Brain Hippocampus Middle	brain
33	chr5:96016800-96038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:96017000-96034000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:96017000-96038000	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:96017200-96027600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:96018800-96025600	Weak transcription	Psoas Muscle	Psoas
38	chr5:96018800-96038200	Weak transcription	Colonic Mucosa	Colon
39	chr5:96018800-96038200	Weak transcription	Spleen	Spleen
40	chr5:96019000-96026800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:96019000-96031600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr5:96019400-96026200	Weak transcription	HMEC	breast
43	chr5:96019400-96031600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr5:96021800-96023800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:96021800-96027800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:96021800-96032000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr5:96022000-96025600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr5:96022000-96025600	Weak transcription	Placenta	Placenta
49	chr5:96022200-96025600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:96022200-96026200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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