Variant report

Variant	rs73777342
Chromosome Location	chr6:140807383-140807384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140807152..140810053-chr6:140862553..140864206,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57499795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60188363	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60881597	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61609233	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776133	0.81[AFR][1000 genomes]
rs73776134	0.81[AFR][1000 genomes]
rs73776141	0.81[AFR][1000 genomes]
rs73776164	0.83[AFR][1000 genomes]
rs73777335	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604769	chr6:140785977-140849702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1033800	chr6:140786914-140844320	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1021127	chr6:140786914-140852961	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604770	chr6:140795635-140849702	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1029847	chr6:140798377-140928132	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv538451	chr6:140798377-140928132	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv1031320	chr6:140798377-141156979	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
22	nsv604771	chr6:140801497-140895423	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140799400-140809200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:140802400-140807600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:140802400-140809000	Weak transcription	Aorta	Aorta
4	chr6:140805200-140807600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:140805200-140808400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:140805600-140807400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:140805800-140808400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:140805800-140808400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:140805800-140808400	Enhancers	HSMMtube	muscle
10	chr6:140805800-140808400	Enhancers	NH-A	brain
11	chr6:140805800-140808600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:140806000-140807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:140806000-140808400	Enhancers	HSMM	muscle
14	chr6:140806000-140808400	Enhancers	Osteobl	bone
15	chr6:140806000-140808600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:140806200-140811000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:140806600-140807400	Enhancers	Colon Smooth Muscle	Colon
18	chr6:140806600-140808400	Enhancers	HMEC	breast
19	chr6:140806800-140808000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:140806800-140808000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:140806800-140808000	Weak transcription	Ovary	ovary
22	chr6:140806800-140808800	Enhancers	NHEK	skin
23	chr6:140806800-140809200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:140807000-140807600	Enhancers	NHDF-Ad	bronchial
25	chr6:140807000-140808200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:140807000-140808400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:140807000-140808400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:140807000-140808400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:140807000-140808400	Enhancers	K562	blood
30	chr6:140807000-140808600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:140807200-140807600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:140807200-140807600	Active TSS	A549	lung
33	chr6:140807200-140807600	Weak transcription	NHLF	lung
34	chr6:140807200-140807800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:140807200-140807800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:140807200-140808000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr6:140807200-140808400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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