Variant report

Variant	rs73777865
Chromosome Location	chr6:143378213-143378214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:143378203-143378430	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143376645..143379470-chr6:143487556..143490248,2	K562	blood:

Variant related genes	Relation type
AIG1	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17072160	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855558	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896612	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896620	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57181177	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58257035	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60517501	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777854	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777862	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777863	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777864	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9399418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3474292	chr6:143378209-143378932	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3474293	chr6:143378209-143378932	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143372000-143380400	Weak transcription	K562	blood
2	chr6:143373600-143380800	Weak transcription	GM12878-XiMat	blood
3	chr6:143374800-143380800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:143375200-143380000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:143375200-143381200	Weak transcription	Aorta	Aorta
6	chr6:143375600-143379600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143376000-143380600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:143376200-143380800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:143376400-143378600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:143376400-143380200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:143376600-143380000	Weak transcription	Liver	Liver
12	chr6:143376800-143380200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:143376800-143380600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:143377200-143380400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:143377200-143380600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:143377200-143380800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:143377200-143380800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:143377200-143380800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:143377400-143380000	Weak transcription	HepG2	liver
20	chr6:143377600-143380800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:143377800-143380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:143377800-143380800	Weak transcription	Fetal Lung	lung
23	chr6:143378200-143378400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:143378200-143380800	Weak transcription	Stomach Mucosa	stomach

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