Variant report

Variant	rs73778087
Chromosome Location	chr6:140239271-140239272
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140238724..140241294-chr6:140241796..140244314,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56398871	1.00[EUR][1000 genomes]
rs73775689	1.00[EUR][1000 genomes]
rs73775694	1.00[EUR][1000 genomes]
rs73778077	1.00[EUR][1000 genomes]
rs73778079	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73778080	1.00[EUR][1000 genomes]
rs73778088	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140227000-140247600	Weak transcription	Small Intestine	intestine
2	chr6:140238600-140239800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:140238600-140242400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:140238600-140242400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:140239000-140239400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:140239000-140239800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:140239000-140239800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:140239000-140239800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:140239000-140240000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:140239000-140241000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:140239000-140241800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:140239000-140242200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:140239200-140239400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:140239200-140239400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:140239200-140239400	Enhancers	NHDF-Ad	bronchial
16	chr6:140239200-140239600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:140239200-140239600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:140239200-140239600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:140239200-140239600	Enhancers	Brain Hippocampus Middle	brain
20	chr6:140239200-140239600	Active TSS	Fetal Brain Male	brain
21	chr6:140239200-140239600	Enhancers	Fetal Lung	lung
22	chr6:140239200-140239800	Active TSS	Colon Smooth Muscle	Colon
23	chr6:140239200-140240000	Active TSS	Stomach Smooth Muscle	stomach
24	chr6:140239200-140240400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:140239200-140242200	Enhancers	K562	blood
26	chr6:140239200-140242400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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