Variant report

Variant	rs73778088
Chromosome Location	chr6:140242577-140242578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56398871	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73775689	1.00[EUR][1000 genomes]
rs73775694	1.00[EUR][1000 genomes]
rs73778077	1.00[EUR][1000 genomes]
rs73778079	1.00[EUR][1000 genomes]
rs73778080	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73778087	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140227000-140247600	Weak transcription	Small Intestine	intestine
2	chr6:140239800-140244800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:140239800-140246400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:140239800-140251600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:140240000-140248000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:140241400-140242600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:140241400-140247200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:140241800-140247200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:140241800-140247800	Weak transcription	Fetal Heart	heart
10	chr6:140242200-140242800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:140242200-140246200	Weak transcription	Osteobl	bone
12	chr6:140242200-140247200	Weak transcription	K562	blood
13	chr6:140242400-140243600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr6:140242400-140245200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:140242400-140246600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:140242400-140246600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:140242400-140247000	Weak transcription	Fetal Brain Male	brain
18	chr6:140242400-140254000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:140242400-140260200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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