Variant report

Variant	rs73778328
Chromosome Location	chr6:132163131-132163132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131972370..131974567-chr6:132160940..132163903,2	MCF-7	breast:
2	chr6:132162392..132164571-chr6:132171274..132173675,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154269	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55720111	1.00[AMR][1000 genomes]
rs59101999	1.00[AMR][1000 genomes]
rs61276918	1.00[AMR][1000 genomes]
rs73537641	1.00[AMR][1000 genomes]
rs73778330	0.81[AFR][1000 genomes]
rs73780756	1.00[AMR][1000 genomes]
rs73780757	1.00[AMR][1000 genomes]
rs73780758	1.00[AMR][1000 genomes]
rs73780759	1.00[AMR][1000 genomes]
rs73780761	1.00[AMR][1000 genomes]
rs73780762	1.00[AMR][1000 genomes]
rs73780767	1.00[AMR][1000 genomes]
rs7745286	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132141000-132176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:132141600-132172000	Weak transcription	HSMM	muscle
3	chr6:132145800-132171800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:132147600-132199200	Weak transcription	Fetal Stomach	stomach
5	chr6:132149800-132172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:132151600-132164800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132151600-132182400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:132154200-132171800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:132158200-132164600	Weak transcription	NHLF	lung
10	chr6:132158200-132171200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:132158400-132165000	Enhancers	HepG2	liver
12	chr6:132159600-132164800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:132159600-132176000	Weak transcription	NH-A	brain
14	chr6:132159600-132179800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:132160000-132180600	Weak transcription	Placenta	Placenta
16	chr6:132160200-132164600	Enhancers	Liver	Liver
17	chr6:132160400-132164800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:132162200-132171800	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:132162200-132211000	Weak transcription	Fetal Kidney	kidney
20	chr6:132162400-132163600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:132162400-132163600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:132162400-132171600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:132162600-132163200	Enhancers	NHDF-Ad	bronchial
24	chr6:132162600-132163600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:132162600-132181000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:132162800-132163200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:132162800-132163200	Enhancers	Pancreas	Pancrea
28	chr6:132163000-132163200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:132163000-132163400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:132163000-132181000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:132163000-132182600	Weak transcription	HSMMtube	muscle
32	chr6:132163000-132213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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