Variant report

Variant	rs73780759
Chromosome Location	chr6:132136244-132136245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55720111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59101999	1.00[AMR][1000 genomes]
rs61276918	1.00[AMR][1000 genomes]
rs73537641	1.00[AMR][1000 genomes]
rs73778328	1.00[AMR][1000 genomes]
rs73780756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780757	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745286	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132130400-132140000	Weak transcription	HSMM	muscle
2	chr6:132130800-132140000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:132132000-132137800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:132132200-132136400	Weak transcription	Liver	Liver
5	chr6:132132200-132138200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:132132200-132148800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132132200-132157800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:132132800-132162400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:132132800-132162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:132133000-132142400	Weak transcription	Pancreas	Pancrea
11	chr6:132133600-132138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:132135000-132140800	Weak transcription	Aorta	Aorta
13	chr6:132135200-132138600	Enhancers	HepG2	liver
14	chr6:132136200-132136400	Enhancers	Fetal Muscle Leg	muscle
15	chr6:132136200-132136400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:132136200-132136800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:132136200-132137600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:132136200-132138200	Enhancers	Fetal Intestine Large	intestine
19	chr6:132136200-132138200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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