Variant report

Variant	rs73778698
Chromosome Location	chr5:107562684-107562685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs2416527	0.83[AMR][1000 genomes]
rs28513512	0.83[AMR][1000 genomes]
rs55825519	0.83[AMR][1000 genomes]
rs56024626	0.83[AMR][1000 genomes]
rs56929525	1.00[AMR][1000 genomes]
rs57269490	0.83[AMR][1000 genomes]
rs57354704	0.83[AMR][1000 genomes]
rs57911118	0.83[AMR][1000 genomes]
rs58040806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58537065	0.83[AMR][1000 genomes]
rs58899755	0.83[AMR][1000 genomes]
rs59260333	0.83[AMR][1000 genomes]
rs59547451	0.89[AFR][1000 genomes]
rs59704928	1.00[AMR][1000 genomes]
rs60212774	0.83[AMR][1000 genomes]
rs60381359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61096927	0.83[AMR][1000 genomes]
rs61201760	0.83[AMR][1000 genomes]
rs61614616	0.83[AMR][1000 genomes]
rs6861104	0.83[AMR][1000 genomes]
rs6866453	0.90[AFR][1000 genomes]
rs6867893	1.00[AMR][1000 genomes]
rs6879038	0.83[AMR][1000 genomes]
rs6879616	1.00[AMR][1000 genomes]
rs6883115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778680	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778682	0.85[AMR][1000 genomes]
rs73778683	0.83[AMR][1000 genomes]
rs73778684	0.85[AMR][1000 genomes]
rs73778685	0.83[AMR][1000 genomes]
rs73778688	0.83[AMR][1000 genomes]
rs73778696	0.83[AMR][1000 genomes]
rs73781305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781306	0.83[AMR][1000 genomes]
rs73781307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781308	0.83[AMR][1000 genomes]
rs73781309	0.83[AMR][1000 genomes]
rs73781312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781321	0.83[AMR][1000 genomes]
rs73781322	0.83[AMR][1000 genomes]
rs73781323	0.83[AMR][1000 genomes]
rs73781324	0.83[AMR][1000 genomes]
rs73781326	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781327	0.83[AMR][1000 genomes]
rs73781330	0.83[AMR][1000 genomes]
rs73781331	0.83[AMR][1000 genomes]
rs73781332	1.00[AMR][1000 genomes]
rs73781335	1.00[AMR][1000 genomes]
rs73781336	1.00[AMR][1000 genomes]
rs73781338	0.85[AMR][1000 genomes]
rs73781339	0.83[AMR][1000 genomes]
rs73781340	0.83[AMR][1000 genomes]
rs73781344	0.83[AMR][1000 genomes]
rs7706235	0.83[AMR][1000 genomes]
rs7709699	0.83[AMR][1000 genomes]
rs7713871	1.00[AMR][1000 genomes]
rs7722719	0.83[AMR][1000 genomes]
rs7722938	0.83[AMR][1000 genomes]
rs7725340	1.00[AMR][1000 genomes]
rs7726195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728430	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737425	0.83[AMR][1000 genomes]
rs962681	0.83[AMR][1000 genomes]
rs9942358	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr5:107546600-107590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:107547000-107577200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:107549200-107578000	Weak transcription	Pancreas	Pancrea
6	chr5:107551200-107569000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:107551800-107567200	Weak transcription	Primary B cells from cord blood	blood
8	chr5:107551800-107568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:107551800-107569600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:107552000-107578800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:107552000-107585000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:107553000-107575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:107553000-107584800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:107553400-107590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:107554600-107574200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:107556200-107566000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:107556400-107580200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:107557200-107568800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr5:107558000-107581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:107559400-107563800	Weak transcription	Ovary	ovary
21	chr5:107559800-107568800	Weak transcription	NHDF-Ad	bronchial
22	chr5:107560200-107568600	Weak transcription	Fetal Heart	heart
23	chr5:107561400-107595000	Weak transcription	Psoas Muscle	Psoas
24	chr5:107561800-107575200	Weak transcription	Right Ventricle	heart
25	chr5:107561800-107576000	Weak transcription	Fetal Intestine Small	intestine

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