Variant report

Variant	rs73780011
Chromosome Location	chr6:150860512-150860513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56115916	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59106356	1.00[AMR][1000 genomes]
rs60834143	1.00[AMR][1000 genomes]
rs73607069	0.83[AFR][1000 genomes]
rs73780008	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782625	1.00[AMR][1000 genomes]
rs73782627	1.00[AMR][1000 genomes]
rs73782629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150857000-150862400	Weak transcription	Fetal Lung	lung
2	chr6:150857600-150862400	Weak transcription	HepG2	liver
3	chr6:150858000-150864000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:150858000-150864200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:150859000-150862800	Weak transcription	Right Atrium	heart
6	chr6:150859000-150865400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150859200-150860600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150859400-150860600	Weak transcription	Lung	lung
9	chr6:150859400-150862400	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:150859400-150867400	Weak transcription	Fetal Kidney	kidney
11	chr6:150860000-150863400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:150860200-150861000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:150860200-150861000	Enhancers	Liver	Liver
14	chr6:150860400-150862800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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