Variant report

Variant	rs73782625
Chromosome Location	chr6:150739805-150739806
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150738919..150740367-chr6:151006693..151007780,5	MCF-7	breast:
2	chr6:150739625..150740200-chr6:151007043..151007665,2	MCF-7	breast:
3	chr6:150739101..150740605-chr6:151135391..151136891,7	MCF-7	breast:
4	chr6:150739007..150740606-chr6:151135993..151137184,5	MCF-7	breast:
5	chr6:150739151..150742146-chr6:150742181..150746418,5	K562	blood:
6	chr6:150739171..150740801-chr6:150920989..150922541,9	MCF-7	breast:
7	chr6:150739275..150740853-chr6:151135613..151137022,11	K562	blood:
8	chr6:150672100..150674423-chr6:150737681..150739812,2	K562	blood:
9	chr6:150739022..150740801-chr6:151062707..151063998,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120278	Chromatin interaction
ENSG00000232891	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56115916	1.00[AMR][1000 genomes]
rs59106356	1.00[AMR][1000 genomes]
rs60834143	1.00[AMR][1000 genomes]
rs73780008	1.00[AMR][1000 genomes]
rs73780011	1.00[AMR][1000 genomes]
rs73782627	1.00[AMR][1000 genomes]
rs73782629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150731200-150740200	Weak transcription	Spleen	Spleen
2	chr6:150732000-150740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150739000-150740000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:150739000-150740200	Enhancers	Placenta	Placenta
5	chr6:150739000-150740800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:150739000-150740800	Enhancers	Hela-S3	cervix
7	chr6:150739200-150740000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:150739200-150740000	Flanking Active TSS	Osteobl	bone
9	chr6:150739200-150740200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:150739200-150740200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:150739200-150740400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:150739200-150740800	Enhancers	Fetal Brain Male	brain
13	chr6:150739400-150740000	Flanking Active TSS	Fetal Lung	lung
14	chr6:150739400-150740200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:150739400-150740200	Flanking Active TSS	Fetal Kidney	kidney
16	chr6:150739400-150740200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:150739400-150740400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:150739400-150740400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr6:150739400-150740400	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:150739400-150740400	Active TSS	HUVEC	blood vessel
21	chr6:150739400-150740600	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr6:150739400-150740600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:150739400-150740600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:150739400-150740600	Flanking Active TSS	HMEC	breast
25	chr6:150739400-150740800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:150739400-150740800	Active TSS	Primary T cells from cord blood	blood
27	chr6:150739600-150740000	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr6:150739600-150740000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr6:150739600-150740000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr6:150739600-150740000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr6:150739600-150740000	Flanking Active TSS	Liver	Liver
32	chr6:150739600-150740000	Active TSS	Fetal Heart	heart
33	chr6:150739600-150740000	Flanking Active TSS	Fetal Thymus	thymus
34	chr6:150739600-150740000	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr6:150739600-150740000	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:150739600-150740200	Active TSS	Primary T cells fromperipheralblood	blood
37	chr6:150739600-150740200	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr6:150739600-150740200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:150739600-150740200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:150739600-150740200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:150739600-150740200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:150739600-150740200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:150739600-150740200	Active TSS	Fetal Muscle Leg	muscle
44	chr6:150739600-150740200	Enhancers	HepG2	liver
45	chr6:150739600-150740400	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr6:150739600-150740400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr6:150739600-150740400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:150739600-150740400	Active TSS	Colonic Mucosa	Colon
49	chr6:150739600-150740400	Active TSS	Duodenum Mucosa	Duodenum
50	chr6:150739600-150740400	Active TSS	Ovary	ovary

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