The 2.0 version of rSNPBase

Variant report

Variant rs73781646
Chromosome Location chr5:115855493-115855494
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115828200-115865400 Weak transcription Primary T cells from cord blood blood
2 chr5:115839000-115855600 Weak transcription Left Ventricle heart
3 chr5:115839000-115856400 Weak transcription HSMMtube muscle
4 chr5:115839600-115859800 Weak transcription Colonic Mucosa Colon
5 chr5:115839800-115856400 Weak transcription Fetal Muscle Trunk muscle
6 chr5:115841600-115858000 Enhancers iPS-15b Cell Line embryonic stem cell
7 chr5:115845800-115856800 Weak transcription Pancreas Pancrea
8 chr5:115845800-115867200 Weak transcription Right Ventricle heart
9 chr5:115846200-115855600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr5:115847200-115859800 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr5:115847800-115856800 Weak transcription Psoas Muscle Psoas
12 chr5:115848600-115864000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr5:115849600-115857000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr5:115850200-115855600 Enhancers Brain Substantia Nigra brain
15 chr5:115850600-115855800 Enhancers iPS-18 Cell Line embryonic stem cell
16 chr5:115850600-115855800 Enhancers Cortex derived primary cultured neurospheres brain
17 chr5:115850800-115856400 Weak transcription Right Atrium heart
18 chr5:115850800-115856800 Weak transcription Ovary ovary
19 chr5:115851000-115864000 Weak transcription Small Intestine intestine
20 chr5:115851600-115857000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr5:115851800-115856400 Weak transcription Fetal Stomach stomach
22 chr5:115852000-115856600 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr5:115852000-115857000 Weak transcription Rectal Smooth Muscle rectum
24 chr5:115852200-115856400 Weak transcription Adipose Nuclei Adipose
25 chr5:115852600-115856800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr5:115852600-115856800 Weak transcription Fetal Lung lung
27 chr5:115852800-115856600 Enhancers HUES64 Cell Line embryonic stem cell
28 chr5:115852800-115856600 Weak transcription Colon Smooth Muscle Colon
29 chr5:115853000-115857200 Genic enhancers HUES6 Cell Line embryonic stem cell
30 chr5:115853000-115858000 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr5:115853000-115858800 Weak transcription Stomach Smooth Muscle stomach
32 chr5:115853200-115859000 Enhancers Fetal Muscle Leg muscle
33 chr5:115853400-115855800 Enhancers H1 Cell Line embryonic stem cell
34 chr5:115853400-115856000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr5:115853600-115856000 Weak transcription ES-WA7 Cell Line embryonic stem cell
36 chr5:115854000-115855600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
37 chr5:115854000-115857400 Enhancers H9 Cell Line embryonic stem cell
38 chr5:115854200-115855800 Enhancers Fetal Intestine Small intestine
39 chr5:115854200-115859600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr5:115854400-115855800 Enhancers HUES48 Cell Line embryonic stem cell
41 chr5:115854400-115858000 Enhancers iPS-20b Cell Line embryonic stem cell
42 chr5:115854600-115856000 Genic enhancers ES-I3 Cell Line embryonic stem cell
43 chr5:115854600-115856400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr5:115854600-115856400 Weak transcription Placenta Placenta
45 chr5:115854600-115856600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr5:115854600-115856600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr5:115854600-115860800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr5:115854800-115856400 Weak transcription HMEC breast
49 chr5:115854800-115856600 Weak transcription NHEK skin
50 chr5:115854800-115858400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015