Variant report

Variant	rs73783730
Chromosome Location	chr5:116558385-116558386
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10080021	0.84[ASN][1000 genomes]
rs10463689	0.85[ASN][1000 genomes]
rs11741620	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11957082	0.84[ASN][1000 genomes]
rs1603123	0.85[ASN][1000 genomes]
rs17141334	0.96[ASN][1000 genomes]
rs17141342	0.96[ASN][1000 genomes]
rs55813945	0.84[ASN][1000 genomes]
rs55985764	0.96[ASN][1000 genomes]
rs58093687	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60269947	0.84[ASN][1000 genomes]
rs60756555	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595020	0.84[ASN][1000 genomes]
rs6862441	0.84[ASN][1000 genomes]
rs6870246	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:116557400-116558400	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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