Variant report
| Variant | rs73785568 |
|---|---|
| Chromosome Location | chr5:126615285-126615286 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:126364807..126367569-chr5:126615022..126617919,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000173926 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11949886 | 1.00[EUR][1000 genomes] |
| rs12653273 | 0.95[AFR][1000 genomes] |
| rs12659381 | 0.93[AFR][1000 genomes] |
| rs12659424 | 0.93[AFR][1000 genomes] |
| rs55638823 | 0.95[AFR][1000 genomes] |
| rs57164852 | 0.87[AFR][1000 genomes] |
| rs58011598 | 0.88[AFR][1000 genomes] |
| rs58047377 | 0.95[AFR][1000 genomes] |
| rs58727001 | 0.92[AFR][1000 genomes] |
| rs59277332 | 1.00[EUR][1000 genomes] |
| rs59871357 | 0.92[AFR][1000 genomes] |
| rs60138783 | 0.92[AFR][1000 genomes] |
| rs73785544 | 1.00[EUR][1000 genomes] |
| rs73785545 | 1.00[EUR][1000 genomes] |
| rs73785555 | 0.92[AFR][1000 genomes] |
| rs73785556 | 0.92[AFR][1000 genomes] |
| rs73785558 | 0.92[AFR][1000 genomes] |
| rs73785567 | 1.00[EUR][1000 genomes] |
| rs73785569 | 1.00[EUR][1000 genomes] |
| rs73785570 | 1.00[EUR][1000 genomes] |
| rs7723558 | 0.92[AFR][1000 genomes] |
| rs7728190 | 0.92[AFR][1000 genomes] |
| rs960927 | 0.95[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024265 | chr5:126213004-126691163 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033607 | chr5:126385181-127304459 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:126611200-126616200 | Weak transcription | Brain Hippocampus Middle | brain |
