Variant report

Variant	rs73785569
Chromosome Location	chr5:126616649-126616650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11949886	1.00[EUR][1000 genomes]
rs17165057	1.00[AMR][1000 genomes]
rs17165142	1.00[AMR][1000 genomes]
rs59277332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61741339	1.00[AMR][1000 genomes]
rs73785544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73785545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73785557	1.00[AMR][1000 genomes]
rs73785567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73785568	1.00[EUR][1000 genomes]
rs73785570	1.00[EUR][1000 genomes]
rs73785571	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126616000-126617000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:126616200-126616800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr5:126616200-126616800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:126616200-126616800	Enhancers	Brain Anterior Caudate	brain
5	chr5:126616200-126617000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:126616200-126617400	Enhancers	Pancreas	Pancrea
7	chr5:126616400-126616800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr5:126616400-126616800	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr5:126616400-126617000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:126616600-126616800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:126616600-126617600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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