Variant report

Variant	rs17165142
Chromosome Location	chr5:126562625-126562626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17165057	1.00[AMR][1000 genomes]
rs59277332	1.00[AMR][1000 genomes]
rs61741339	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73785538	0.89[AFR][1000 genomes]
rs73785540	0.89[AFR][1000 genomes]
rs73785542	0.89[AFR][1000 genomes]
rs73785544	1.00[AMR][1000 genomes]
rs73785545	1.00[AMR][1000 genomes]
rs73785557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73785567	1.00[AMR][1000 genomes]
rs73785569	1.00[AMR][1000 genomes]
rs73785571	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126559400-126564400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:126559400-126564400	Weak transcription	GM12878-XiMat	blood
3	chr5:126560400-126564400	Weak transcription	Brain Substantia Nigra	brain
4	chr5:126562400-126563000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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