Variant report

Variant	rs73785538
Chromosome Location	chr5:126564265-126564266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:126563208..126565560-chr5:126568071..126570368,3	MCF-7	breast:
2	chr5:126551353..126555080-chr5:126562257..126566254,3	MCF-7	breast:
3	chr5:126406696..126409749-chr5:126564025..126566691,3	MCF-7	breast:
4	chr5:126563846..126566302-chr5:126579548..126581545,2	MCF-7	breast:
5	chr5:126551276..126553458-chr5:126563225..126565412,2	K562	blood:
6	chr5:126560427..126561970-chr5:126563640..126565855,2	K562	blood:
7	chr5:126541458..126543410-chr5:126564041..126565697,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf63-1	chr5:126563477-126564838	NONHSAT103615

No data

Variant related genes	Relation type
ENSG00000164241	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17165142	0.89[AFR][1000 genomes]
rs73785531	0.88[AFR][1000 genomes]
rs73785540	1.00[AFR][1000 genomes]
rs73785542	1.00[AFR][1000 genomes]
rs73785557	0.84[AFR][1000 genomes]
rs73785572	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126559400-126564400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:126559400-126564400	Weak transcription	GM12878-XiMat	blood
3	chr5:126560400-126564400	Weak transcription	Brain Substantia Nigra	brain
4	chr5:126563000-126564600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:126563400-126564400	Enhancers	NH-A	brain
6	chr5:126563400-126564800	Enhancers	HMEC	breast
7	chr5:126563600-126564400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:126563600-126564400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:126563800-126564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:126564000-126564600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:126564000-126565000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:126564200-126564400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr5:126564200-126564400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr5:126564200-126564400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:126564200-126564400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:126564200-126564400	Enhancers	Adipose Nuclei	Adipose
17	chr5:126564200-126564400	Enhancers	Stomach Smooth Muscle	stomach
18	chr5:126564200-126564400	Enhancers	Spleen	Spleen
19	chr5:126564200-126564400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr5:126564200-126564600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr5:126564200-126564600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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