Variant report

Variant	rs73785542
Chromosome Location	chr5:126572212-126572213
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17165142	0.89[AFR][1000 genomes]
rs73785531	0.88[AFR][1000 genomes]
rs73785538	1.00[AFR][1000 genomes]
rs73785540	1.00[AFR][1000 genomes]
rs73785557	0.84[AFR][1000 genomes]
rs73785572	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126565600-126576200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:126566000-126575600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:126566000-126575800	Weak transcription	Pancreas	Pancrea
4	chr5:126566000-126575800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:126566000-126575800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:126566000-126578600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:126566200-126572400	Weak transcription	Primary B cells from cord blood	blood
8	chr5:126566600-126575600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:126570200-126572600	Weak transcription	Primary T cells from cord blood	blood
10	chr5:126572200-126573200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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