Variant report

Variant	rs73786512
Chromosome Location	chr5:128250929-128250930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11948212	1.00[AMR][1000 genomes]
rs11952143	1.00[AMR][1000 genomes]
rs57298656	1.00[AMR][1000 genomes]
rs58361768	1.00[AMR][1000 genomes]
rs59361020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59966553	1.00[AMR][1000 genomes]
rs6595871	1.00[AMR][1000 genomes]
rs6868435	1.00[AMR][1000 genomes]
rs6890195	1.00[AMR][1000 genomes]
rs6891849	1.00[AMR][1000 genomes]
rs73784500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784803	1.00[AMR][1000 genomes]
rs73784808	1.00[AMR][1000 genomes]
rs73784818	1.00[AMR][1000 genomes]
rs73786509	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786510	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786554	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7713086	1.00[AMR][1000 genomes]
rs7720356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7720753	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723102	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128242200-128252400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links