Variant report

Variant	rs7723102
Chromosome Location	chr5:128327823-128327824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128327480..128330043-chr5:128331168..128333231,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11948212	1.00[AMR][1000 genomes]
rs11952143	1.00[AMR][1000 genomes]
rs57298656	1.00[AMR][1000 genomes]
rs58361768	1.00[AMR][1000 genomes]
rs59361020	1.00[AMR][1000 genomes]
rs59966553	1.00[AMR][1000 genomes]
rs6595871	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6868435	1.00[AMR][1000 genomes]
rs6890195	1.00[AMR][1000 genomes]
rs6891849	1.00[AMR][1000 genomes]
rs73784500	1.00[AMR][1000 genomes]
rs73784803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784818	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786509	1.00[AMR][1000 genomes]
rs73786510	1.00[AMR][1000 genomes]
rs73786511	1.00[AMR][1000 genomes]
rs73786512	1.00[AMR][1000 genomes]
rs73786554	1.00[AMR][1000 genomes]
rs7707504	1.00[AMR][1000 genomes]
rs7713086	1.00[AMR][1000 genomes]
rs7720356	1.00[AMR][1000 genomes]
rs7720753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882843	chr5:128325025-128367988	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv882844	chr5:128325025-128377555	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv882845	chr5:128325025-128404226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3445012	chr5:128327512-128328840	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2407327	chr5:128327652-128328115	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3525274	chr5:128327702-128328034	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3525270	chr5:128327733-128328026	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3525269	chr5:128327736-128327980	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3525271	chr5:128327744-128327938	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3469906	chr5:128327758-128327965	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv5198	chr5:128327765-128327987	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3525272	chr5:128327777-128327971	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv327282	chr5:128327792-128327877	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3469907	chr5:128327792-128327966	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3525275	chr5:128327792-128327966	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3341570	chr5:128327797-128327941	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128309600-128338200	Weak transcription	Left Ventricle	heart
2	chr5:128320800-128328000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:128321000-128335000	Weak transcription	Fetal Heart	heart
4	chr5:128326600-128335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:128327000-128328200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:128327800-128328000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:128327800-128328200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links