Variant report

Variant	rs73787632
Chromosome Location	chr6:163805534-163805535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12110648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56377162	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934643	1.00[AMR][1000 genomes]
rs6939555	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939751	1.00[AMR][1000 genomes]
rs73784468	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784479	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742678	1.00[AMR][1000 genomes]
rs7753923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765302	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9784871	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
2	chr6:163802600-163807600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:163802600-163812800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:163803000-163807200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:163803200-163812600	Weak transcription	Fetal Heart	heart
6	chr6:163803400-163807800	Weak transcription	HepG2	liver
7	chr6:163804800-163805800	Enhancers	NHEK	skin
8	chr6:163805000-163805600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:163805200-163805600	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:163805200-163805600	Flanking Active TSS	Hela-S3	cervix
11	chr6:163805400-163806400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:163805400-163806400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:163805400-163807600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:163805400-163813000	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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