Variant report

Variant	rs6934643
Chromosome Location	chr6:163743351-163743352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163742095..163749894-chr6:163832230..163837162,13	MCF-7	breast:
2	chr6:163740696..163743616-chr6:163834506..163837495,2	K562	blood:

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11969695	1.00[AMR][1000 genomes]
rs12110648	1.00[AMR][1000 genomes]
rs56377162	1.00[AMR][1000 genomes]
rs60391768	1.00[AMR][1000 genomes]
rs6939555	1.00[AMR][1000 genomes]
rs6939751	1.00[AMR][1000 genomes]
rs73784526	1.00[AMR][1000 genomes]
rs73784527	1.00[AMR][1000 genomes]
rs73784528	1.00[AMR][1000 genomes]
rs73784529	1.00[AMR][1000 genomes]
rs73784533	1.00[AMR][1000 genomes]
rs73787632	1.00[AMR][1000 genomes]
rs7742678	1.00[AMR][1000 genomes]
rs7753923	1.00[AMR][1000 genomes]
rs7765302	1.00[AMR][1000 genomes]
rs7767242	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
2	chr6:163736200-163745800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:163737200-163744800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:163740000-163744400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:163740000-163745600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:163740200-163746000	Weak transcription	Psoas Muscle	Psoas
7	chr6:163740200-163746200	Weak transcription	Lung	lung
8	chr6:163741000-163743600	Enhancers	Liver	Liver
9	chr6:163741000-163744600	Enhancers	Brain Anterior Caudate	brain
10	chr6:163741400-163744400	Enhancers	Brain Hippocampus Middle	brain
11	chr6:163741400-163744400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:163741400-163746600	Enhancers	Adipose Nuclei	Adipose
13	chr6:163741600-163744400	Enhancers	Brain Substantia Nigra	brain
14	chr6:163741800-163744400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:163741800-163744600	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:163741800-163745400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:163742000-163743400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:163742000-163743600	Enhancers	Fetal Heart	heart
19	chr6:163742000-163744400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:163742000-163744400	Weak transcription	A549	lung
21	chr6:163742200-163744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:163742400-163743400	Enhancers	Left Ventricle	heart
23	chr6:163742400-163743400	Enhancers	Right Ventricle	heart
24	chr6:163742400-163744800	Enhancers	Pancreas	Pancrea
25	chr6:163742600-163743400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:163742600-163744600	Weak transcription	Brain Angular Gyrus	brain
27	chr6:163742800-163743400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr6:163742800-163744400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:163742800-163746200	Weak transcription	Ovary	ovary
30	chr6:163743000-163743400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:163743000-163743400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr6:163743000-163743400	Enhancers	Stomach Smooth Muscle	stomach
33	chr6:163743000-163744000	Weak transcription	Right Atrium	heart
34	chr6:163743000-163744600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:163743000-163744600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:163743200-163743400	Enhancers	Gastric	stomach
37	chr6:163743200-163744800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links