Variant report

Variant	rs73788183
Chromosome Location	chr6:167316470-167316471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGFR1OP-1	chr6:167314134-167317318	l_3322_chr6:167314133-167321259_testes

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs3756831	1.00[AMR][1000 genomes]
rs57179541	1.00[AMR][1000 genomes]
rs57277468	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58474231	1.00[AMR][1000 genomes]
rs60175539	1.00[AMR][1000 genomes]
rs60277858	1.00[AMR][1000 genomes]
rs60567158	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909065	1.00[AMR][1000 genomes]
rs6910428	1.00[AMR][1000 genomes]
rs6911828	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914819	1.00[AMR][1000 genomes]
rs6919642	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922982	1.00[AMR][1000 genomes]
rs6937475	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788178	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788179	1.00[AMR][1000 genomes]
rs73788180	1.00[AMR][1000 genomes]
rs73788185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752309	1.00[AMR][1000 genomes]
rs7761960	1.00[AMR][1000 genomes]
rs7767708	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv605327	chr6:167185674-167360389	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1027314	chr6:167194653-167355961	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538542	chr6:167194653-167355961	Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv605332	chr6:167198027-167353701	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
11	nsv605333	chr6:167201033-167321693	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
13	nsv823929	chr6:167312238-167317985	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167297800-167320400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:167298200-167320800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:167307600-167317200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:167312200-167316800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:167313200-167317200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:167315400-167320000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:167315400-167321200	Weak transcription	Gastric	stomach
8	chr6:167315600-167317000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:167315800-167320400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:167315800-167341600	Weak transcription	Pancreas	Pancrea
11	chr6:167316000-167317600	Weak transcription	Spleen	Spleen
12	chr6:167316400-167316600	Enhancers	Brain Hippocampus Middle	brain
13	chr6:167316400-167320400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links