Variant report

Variant	rs7752309
Chromosome Location	chr6:167362757-167362758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167361983..167365004-chr6:167367480..167371949,7	MCF-7	breast:
2	chr6:167358096..167360750-chr6:167361902..167364646,4	K562	blood:
3	chr6:167362668..167365438-chr6:167411450..167414365,2	MCF-7	breast:
4	chr6:167353412..167356832-chr6:167362421..167365420,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249141	Chromatin interaction
ENSG00000213066	Chromatin interaction
ENSG00000026297	Chromatin interaction
ENSG00000272980	Chromatin interaction
ENSG00000227598	Chromatin interaction
ENSG00000197146	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16899505	1.00[EUR][1000 genomes]
rs3756831	1.00[AMR][1000 genomes]
rs55939864	1.00[EUR][1000 genomes]
rs57179541	1.00[AMR][1000 genomes]
rs57277468	1.00[AMR][1000 genomes]
rs58474231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60175539	1.00[AMR][1000 genomes]
rs60277858	1.00[AMR][1000 genomes]
rs60567158	1.00[AMR][1000 genomes]
rs6909065	1.00[AMR][1000 genomes]
rs6910428	1.00[AMR][1000 genomes]
rs6911828	1.00[AMR][1000 genomes]
rs6914819	1.00[AMR][1000 genomes]
rs6919642	1.00[AMR][1000 genomes]
rs6922982	1.00[AMR][1000 genomes]
rs6937475	1.00[AMR][1000 genomes]
rs73788146	1.00[EUR][1000 genomes]
rs73788147	1.00[EUR][1000 genomes]
rs73788151	1.00[EUR][1000 genomes]
rs73788152	1.00[EUR][1000 genomes]
rs73788178	1.00[AMR][1000 genomes]
rs73788179	1.00[AMR][1000 genomes]
rs73788180	1.00[AMR][1000 genomes]
rs73788183	1.00[AMR][1000 genomes]
rs73788185	1.00[AMR][1000 genomes]
rs73788186	1.00[AMR][1000 genomes]
rs73788187	1.00[AMR][1000 genomes]
rs7761960	1.00[AMR][1000 genomes]
rs7767708	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1034359	chr6:167359643-167384714	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167337600-167363400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:167340000-167363000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:167340000-167363000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:167340200-167362800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:167340400-167363000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:167340600-167363000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:167341000-167368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:167341200-167368800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:167342400-167368600	Weak transcription	Fetal Heart	heart
10	chr6:167344200-167364000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:167344200-167368600	Weak transcription	Right Atrium	heart
12	chr6:167344400-167363600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:167344400-167364000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:167348400-167364800	Weak transcription	Brain Substantia Nigra	brain
15	chr6:167350000-167363600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:167350600-167363200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:167350600-167366400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:167350600-167367600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:167352200-167363200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:167352200-167368800	Weak transcription	Fetal Kidney	kidney
21	chr6:167352400-167363200	Weak transcription	Small Intestine	intestine
22	chr6:167352400-167364800	Weak transcription	Right Ventricle	heart
23	chr6:167353600-167364000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:167353800-167366600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:167354200-167363200	Weak transcription	Brain Germinal Matrix	brain
26	chr6:167354400-167364800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:167354600-167363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:167354600-167364800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:167354600-167368800	Weak transcription	HSMM	muscle
30	chr6:167354600-167369000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:167354600-167369000	Weak transcription	A549	lung
32	chr6:167354800-167363400	Weak transcription	Brain Anterior Caudate	brain
33	chr6:167356400-167366800	Strong transcription	Fetal Intestine Small	intestine
34	chr6:167356800-167363000	Strong transcription	Fetal Thymus	thymus
35	chr6:167357000-167363200	Strong transcription	Primary T cells from cord blood	blood
36	chr6:167357200-167363200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:167357200-167363400	Weak transcription	K562	blood
38	chr6:167357200-167364000	Weak transcription	Left Ventricle	heart
39	chr6:167357400-167363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:167359200-167365400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr6:167360000-167363200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:167360000-167363200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:167360000-167368800	Weak transcription	Fetal Lung	lung
44	chr6:167360600-167363000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
45	chr6:167360600-167363200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:167360600-167368800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:167360600-167368800	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:167360600-167369000	Weak transcription	Osteobl	bone
49	chr6:167360800-167363200	Weak transcription	Dnd41	blood
50	chr6:167360800-167363400	Weak transcription	Placenta Amnion	Placenta Amnion

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