Variant report

Variant	rs73788818
Chromosome Location	chr6:147535618-147535619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:147534848..147537270-chr6:147604730..147607356,2	K562	blood:
2	chr6:147442930..147446294-chr6:147532679..147536475,3	K562	blood:
3	chr6:147207096..147209923-chr6:147534752..147537140,2	K562	blood:
4	chr6:147185541..147187437-chr6:147534820..147537621,2	K562	blood:
5	chr6:147360421..147363039-chr6:147534968..147537211,2	K562	blood:
6	chr6:147217791..147220751-chr6:147534803..147537147,3	K562	blood:
7	chr6:147316468..147318660-chr6:147533860..147536236,2	K562	blood:

No data

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17076672	0.95[AFR][1000 genomes]
rs17076679	0.81[AFR][1000 genomes]
rs17076691	0.81[AFR][1000 genomes]
rs17076702	0.83[AFR][1000 genomes]
rs34181841	0.83[AFR][1000 genomes]
rs55691000	0.95[AFR][1000 genomes]
rs55758181	0.90[AFR][1000 genomes]
rs57629542	0.95[AFR][1000 genomes]
rs57867594	0.95[AFR][1000 genomes]
rs58570586	0.81[AFR][1000 genomes]
rs58638359	0.92[AFR][1000 genomes]
rs58831496	0.95[AFR][1000 genomes]
rs59575940	0.95[AFR][1000 genomes]
rs60225993	0.81[AFR][1000 genomes]
rs60412958	0.90[AFR][1000 genomes]
rs60969570	0.95[AFR][1000 genomes]
rs61078293	0.83[AFR][1000 genomes]
rs73788820	1.00[AFR][1000 genomes]
rs73788821	1.00[AFR][1000 genomes]
rs73788835	0.81[AFR][1000 genomes]
rs73788836	0.95[AFR][1000 genomes]
rs73788839	0.95[AFR][1000 genomes]
rs73788842	0.95[AFR][1000 genomes]
rs73788844	0.95[AFR][1000 genomes]
rs9322096	0.81[AFR][1000 genomes]
rs9322097	0.83[AFR][1000 genomes]
rs9485157	0.81[AFR][1000 genomes]
rs9485158	0.81[AFR][1000 genomes]
rs9485160	0.81[AFR][1000 genomes]
rs9485161	0.81[AFR][1000 genomes]
rs9485163	0.81[AFR][1000 genomes]
rs9485168	0.83[AFR][1000 genomes]
rs9485169	0.83[AFR][1000 genomes]
rs9497727	0.90[AFR][1000 genomes]
rs9497737	0.81[AFR][1000 genomes]
rs9497739	0.81[AFR][1000 genomes]
rs9497742	0.81[AFR][1000 genomes]
rs9497744	0.81[AFR][1000 genomes]
rs9497745	0.83[AFR][1000 genomes]
rs9497746	0.81[AFR][1000 genomes]
rs9497749	0.81[AFR][1000 genomes]
rs9497750	0.81[AFR][1000 genomes]
rs9497755	0.83[AFR][1000 genomes]
rs9497756	0.83[AFR][1000 genomes]
rs9497758	0.80[AFR][1000 genomes]
rs9497760	0.83[AFR][1000 genomes]
rs9885707	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1820434	chr6:147518489-147543262	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv274916	chr6:147530754-147539570	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147526000-147543400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147526000-147543400	Weak transcription	Pancreas	Pancrea
3	chr6:147526000-147572200	Weak transcription	Lung	lung
4	chr6:147526400-147539600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:147526400-147543200	Weak transcription	Stomach Mucosa	stomach
6	chr6:147526400-147543400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:147526400-147543400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:147527200-147539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:147527200-147539600	Weak transcription	Thymus	Thymus
10	chr6:147527200-147543400	Weak transcription	Fetal Thymus	thymus
11	chr6:147527200-147543600	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:147527200-147544400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:147527200-147547400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:147527200-147548400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:147527200-147549000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:147527200-147557800	Weak transcription	Fetal Stomach	stomach
17	chr6:147527200-147570000	Weak transcription	Left Ventricle	heart
18	chr6:147527200-147572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:147527200-147572200	Weak transcription	Esophagus	oesophagus
20	chr6:147527400-147539600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:147527400-147540200	Weak transcription	Fetal Kidney	kidney
22	chr6:147527400-147543000	Weak transcription	Fetal Intestine Small	intestine
23	chr6:147527400-147543200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:147527400-147543200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:147527400-147558800	Weak transcription	Primary B cells from cord blood	blood
26	chr6:147527400-147563800	Weak transcription	NH-A	brain
27	chr6:147527400-147566800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:147527400-147576400	Weak transcription	HSMMtube	muscle
29	chr6:147527600-147549200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:147527600-147559600	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:147527800-147539600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:147527800-147539800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:147527800-147543000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:147528000-147543200	Weak transcription	HepG2	liver
36	chr6:147528200-147551800	Weak transcription	HUVEC	blood vessel
37	chr6:147528800-147539600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:147528800-147545000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:147528800-147549000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:147528800-147565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:147528800-147572000	Weak transcription	A549	lung
42	chr6:147529000-147544800	Weak transcription	Brain Angular Gyrus	brain
43	chr6:147529000-147572200	Weak transcription	Aorta	Aorta
44	chr6:147529200-147539000	Weak transcription	Fetal Intestine Large	intestine
45	chr6:147529200-147542800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:147529200-147543200	Weak transcription	GM12878-XiMat	blood
47	chr6:147529200-147543400	Weak transcription	NHLF	lung
48	chr6:147529400-147571800	Weak transcription	Fetal Brain Male	brain
49	chr6:147529600-147536200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:147529600-147539800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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