Variant report

Variant	rs9322097
Chromosome Location	chr6:147639686-147639687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147638465..147640199-chr6:147644851..147646514,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10080610	0.93[AFR][1000 genomes]
rs1034245	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs17076672	0.83[AFR][1000 genomes]
rs17076679	0.98[AFR][1000 genomes]
rs17076691	0.98[AFR][1000 genomes]
rs17076702	1.00[AFR][1000 genomes]
rs34181841	1.00[AFR][1000 genomes]
rs55691000	0.83[AFR][1000 genomes]
rs55758181	0.88[AFR][1000 genomes]
rs56837006	0.90[AFR][1000 genomes]
rs58570586	0.98[AFR][1000 genomes]
rs58756001	0.87[AFR][1000 genomes]
rs58831496	0.83[AFR][1000 genomes]
rs60225993	0.98[AFR][1000 genomes]
rs60412958	0.88[AFR][1000 genomes]
rs60969570	0.83[AFR][1000 genomes]
rs61078293	1.00[AFR][1000 genomes]
rs73787171	0.95[AFR][1000 genomes]
rs73787179	0.88[AFR][1000 genomes]
rs73788818	0.83[AFR][1000 genomes]
rs73788820	0.83[AFR][1000 genomes]
rs73788821	0.83[AFR][1000 genomes]
rs73788836	0.83[AFR][1000 genomes]
rs73788839	0.83[AFR][1000 genomes]
rs73788842	0.83[AFR][1000 genomes]
rs73788844	0.83[AFR][1000 genomes]
rs9322096	0.82[YRI][hapmap];0.98[AFR][1000 genomes]
rs9322098	0.95[AFR][1000 genomes]
rs9485157	0.98[AFR][1000 genomes]
rs9485158	0.98[AFR][1000 genomes]
rs9485160	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs9485161	0.98[AFR][1000 genomes]
rs9485163	0.98[AFR][1000 genomes]
rs9485164	0.87[AFR][1000 genomes]
rs9485168	1.00[AFR][1000 genomes]
rs9485169	1.00[AFR][1000 genomes]
rs9497727	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9497733	0.93[AFR][1000 genomes]
rs9497735	0.93[AFR][1000 genomes]
rs9497737	0.98[AFR][1000 genomes]
rs9497739	0.98[AFR][1000 genomes]
rs9497742	0.98[AFR][1000 genomes]
rs9497744	0.98[AFR][1000 genomes]
rs9497745	1.00[AFR][1000 genomes]
rs9497746	0.98[AFR][1000 genomes]
rs9497749	0.98[AFR][1000 genomes]
rs9497750	0.98[AFR][1000 genomes]
rs9497755	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9497756	1.00[AFR][1000 genomes]
rs9497758	0.92[AFR][1000 genomes]
rs9497760	1.00[AFR][1000 genomes]
rs9885707	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv886755	chr6:147577646-147729477	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv886756	chr6:147580697-147729477	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv886757	chr6:147591022-147729477	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147584400-147684600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:147607400-147707400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:147609800-147667000	Weak transcription	NHEK	skin
4	chr6:147610200-147700200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:147617400-147643200	Weak transcription	Colonic Mucosa	Colon
6	chr6:147617400-147680200	Weak transcription	Small Intestine	intestine
7	chr6:147617800-147643000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:147618600-147648400	Weak transcription	HSMMtube	muscle
9	chr6:147618600-147649000	Weak transcription	Fetal Kidney	kidney
10	chr6:147619000-147643200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:147619200-147690200	Weak transcription	Fetal Heart	heart
12	chr6:147619600-147642000	Strong transcription	K562	blood
13	chr6:147619800-147643200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:147619800-147648400	Weak transcription	Fetal Brain Male	brain
15	chr6:147622600-147708200	Weak transcription	Psoas Muscle	Psoas
16	chr6:147625000-147642400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:147625600-147643200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:147625600-147647000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:147625600-147648600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:147625800-147641000	Weak transcription	Esophagus	oesophagus
21	chr6:147625800-147651200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:147625800-147664600	Weak transcription	Spleen	Spleen
23	chr6:147625800-147667400	Weak transcription	Gastric	stomach
24	chr6:147626000-147643400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:147626000-147645000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:147626000-147648600	Weak transcription	Fetal Stomach	stomach
27	chr6:147626000-147650600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:147626000-147687000	Weak transcription	Lung	lung
29	chr6:147626000-147700200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:147626200-147642400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:147626200-147643400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:147626200-147643600	Weak transcription	Thymus	Thymus
33	chr6:147626200-147662600	Weak transcription	Pancreas	Pancrea
34	chr6:147626200-147670200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:147626200-147684000	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:147626200-147684000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:147626200-147687200	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:147626200-147707600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:147626400-147655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:147626400-147700000	Weak transcription	Brain Germinal Matrix	brain
41	chr6:147627200-147643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:147628000-147642600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:147628000-147648600	Weak transcription	Fetal Intestine Small	intestine
44	chr6:147628000-147648600	Weak transcription	Right Ventricle	heart
45	chr6:147628000-147668000	Weak transcription	Aorta	Aorta
46	chr6:147628200-147687000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:147629800-147642600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:147631200-147642200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:147631400-147707200	Weak transcription	Hela-S3	cervix
50	chr6:147631600-147640000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links