Variant report

Variant	rs73789047
Chromosome Location	chr6:147181380-147181381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147180477..147182479-chr6:147519593..147522559,2	K562	blood:
2	chr6:147178857..147181755-chr6:147524235..147526085,2	MCF-7	breast:
3	chr6:147180819..147182398-chr6:147544000..147546077,2	K562	blood:
4	chr6:147177851..147181465-chr6:147522179..147525344,4	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55717444	1.00[AMR][1000 genomes]
rs58361422	1.00[AMR][1000 genomes]
rs59130345	1.00[AMR][1000 genomes]
rs73789048	1.00[AMR][1000 genomes]
rs73789053	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147179000-147181800	Weak transcription	Pancreas	Pancrea
2	chr6:147179000-147186000	Weak transcription	Esophagus	oesophagus
3	chr6:147179400-147183800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:147179600-147181400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:147179600-147181600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:147179600-147181600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:147179600-147181600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:147179600-147181800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:147179600-147181800	Weak transcription	Brain Anterior Caudate	brain
10	chr6:147179600-147181800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:147179600-147181800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:147179600-147184800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:147179600-147185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:147179600-147192200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:147180000-147182000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:147180400-147182000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:147180600-147181400	Enhancers	HMEC	breast
18	chr6:147180600-147182800	Genic enhancers	K562	blood
19	chr6:147181000-147182200	Enhancers	NHDF-Ad	bronchial
20	chr6:147181200-147182000	Enhancers	NHLF	lung
21	chr6:147181200-147184400	Enhancers	Liver	Liver

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