Variant report

Variant	rs73789053
Chromosome Location	chr6:147187923-147187924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55717444	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58361422	0.85[AMR][1000 genomes]
rs59130345	0.85[AMR][1000 genomes]
rs62434807	0.81[AFR][1000 genomes]
rs73789047	0.85[AMR][1000 genomes]
rs73789048	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147179600-147192200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:147182200-147197600	Weak transcription	Pancreas	Pancrea
3	chr6:147182800-147193000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:147184400-147188600	Weak transcription	Liver	Liver
5	chr6:147185400-147192000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:147185800-147191200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:147186000-147191400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:147186200-147191600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:147186400-147192800	Weak transcription	Esophagus	oesophagus
10	chr6:147187200-147188000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:147187600-147188200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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