Variant report

Variant	rs73789231
Chromosome Location	chr6:148954135-148954136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56108830	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61455434	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789214	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789220	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789223	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789226	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789227	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73789229	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5530	chr6:148954051-148998924	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:148949200-148955000	Weak transcription	HSMMtube	muscle
2	chr6:148951200-148954800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:148954000-148957200	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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