Variant report

Variant	rs73793295
Chromosome Location	chr5:146207387-146207388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34040465	1.00[EUR][1000 genomes]
rs34714820	1.00[EUR][1000 genomes]
rs59645635	1.00[EUR][1000 genomes]
rs7727336	1.00[EUR][1000 genomes]
rs7730918	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146198600-146212400	Weak transcription	Aorta	Aorta
2	chr5:146204800-146208600	Enhancers	Brain Substantia Nigra	brain
3	chr5:146206200-146208400	Enhancers	Brain Angular Gyrus	brain
4	chr5:146206400-146208400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:146206400-146208400	Enhancers	Fetal Brain Male	brain
6	chr5:146206600-146207400	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:146206600-146208400	Enhancers	Brain Anterior Caudate	brain
8	chr5:146206800-146207800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:146206800-146208600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:146206800-146208800	Enhancers	Brain Cingulate Gyrus	brain
11	chr5:146207000-146207600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:146207000-146208400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:146207000-146208600	Enhancers	Fetal Brain Female	brain
14	chr5:146207200-146208000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:146207200-146208600	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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