Variant report

Variant	rs7730918
Chromosome Location	chr5:146345445-146345446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:145945006..145946414-chr5:146345321..146346218,7	MCF-7	breast:
2	chr5:145912515..145913125-chr5:146345252..146346326,5	K562	blood:
3	chr5:145915960..145916943-chr5:146345407..146345922,2	K562	blood:
4	chr5:145913021..145913966-chr5:146345375..146346116,2	MCF-7	breast:
5	chr5:146001670..146002234-chr5:146345320..146346041,2	MCF-7	breast:
6	chr5:146041750..146042359-chr5:146345292..146346236,3	MCF-7	breast:
7	chr5:146041433..146042095-chr5:146345125..146346054,3	K562	blood:
8	chr5:145921892..145922451-chr5:146345360..146346023,3	MCF-7	breast:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10061731	1.00[EUR][1000 genomes]
rs28695929	1.00[EUR][1000 genomes]
rs6865904	1.00[EUR][1000 genomes]
rs73793295	1.00[EUR][1000 genomes]
rs7726896	1.00[EUR][1000 genomes]
rs7727336	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146342800-146347200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:146344200-146347800	Enhancers	Brain Hippocampus Middle	brain
3	chr5:146344800-146346200	Enhancers	Brain Anterior Caudate	brain
4	chr5:146345000-146345600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:146345000-146346000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:146345000-146347800	Enhancers	Brain Cingulate Gyrus	brain
7	chr5:146345000-146348000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr5:146345000-146348000	Enhancers	Brain Substantia Nigra	brain
9	chr5:146345200-146346000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:146345200-146346200	Enhancers	Fetal Brain Male	brain
11	chr5:146345200-146347800	Enhancers	Brain Angular Gyrus	brain
12	chr5:146345400-146345800	Enhancers	Brain Germinal Matrix	brain
13	chr5:146345400-146345800	Enhancers	Colon Smooth Muscle	Colon
14	chr5:146345400-146346000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:146345400-146346000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:146345400-146346000	Enhancers	Fetal Brain Female	brain
17	chr5:146345400-146346000	Enhancers	Left Ventricle	heart
18	chr5:146345400-146346200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:146345400-146346200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:146345400-146346200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr5:146345400-146346200	Enhancers	Ovary	ovary
22	chr5:146345400-146346200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:146345400-146346200	Enhancers	Rectal Smooth Muscle	rectum
24	chr5:146345400-146347600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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