Variant report

Variant	rs73794733
Chromosome Location	chr5:146817754-146817755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56095645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56171142	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56269143	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58995894	0.93[AFR][1000 genomes]
rs60658825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794759	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794760	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794761	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146799000-146818400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:146805800-146819200	Enhancers	Colon Smooth Muscle	Colon
4	chr5:146808200-146818800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:146809400-146819200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:146810000-146823400	Weak transcription	Small Intestine	intestine
7	chr5:146810800-146819400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:146810800-146822600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:146811400-146818800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:146811600-146818800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:146812200-146818400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:146812200-146818400	Weak transcription	Aorta	Aorta
13	chr5:146812200-146825600	Weak transcription	Placenta	Placenta
14	chr5:146812400-146824400	Weak transcription	Fetal Stomach	stomach
15	chr5:146813000-146831800	Weak transcription	Right Ventricle	heart
16	chr5:146813200-146828200	Weak transcription	NHLF	lung
17	chr5:146813600-146822600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:146813800-146819600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:146814200-146826400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:146814400-146818200	Enhancers	Fetal Brain Female	brain
21	chr5:146815000-146818400	Enhancers	Ovary	ovary
22	chr5:146815200-146822000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:146815400-146817800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:146815400-146819400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:146815600-146818800	Enhancers	Fetal Brain Male	brain
26	chr5:146815800-146817800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:146815800-146818000	Weak transcription	Spleen	Spleen
28	chr5:146815800-146819000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:146816000-146818800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:146816200-146817800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:146816200-146817800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr5:146816200-146817800	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr5:146816200-146817800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr5:146816200-146819200	Enhancers	NH-A	brain
35	chr5:146816200-146819400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:146816600-146820600	Enhancers	Stomach Smooth Muscle	stomach
37	chr5:146816800-146817800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:146816800-146818200	Enhancers	Fetal Heart	heart
39	chr5:146816800-146820200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:146816800-146823400	Weak transcription	Left Ventricle	heart
41	chr5:146816800-146826200	Weak transcription	Lung	lung
42	chr5:146817200-146818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:146817200-146818400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:146817200-146824600	Weak transcription	Fetal Muscle Leg	muscle
45	chr5:146817200-146825600	Weak transcription	Right Atrium	heart
46	chr5:146817200-146826200	Weak transcription	Psoas Muscle	Psoas
47	chr5:146817200-146829000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:146817200-146830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr5:146817200-146831800	Weak transcription	Esophagus	oesophagus
50	chr5:146817400-146818400	Weak transcription	H1 Cell Line	embryonic stem cell

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