Variant report

Variant	rs73798921
Chromosome Location	chr5:151653562-151653563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73795903	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798045	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73799614	0.86[AFR][1000 genomes]
rs73800405	0.86[AFR][1000 genomes]
rs73800406	0.86[AFR][1000 genomes]
rs73800409	0.86[AFR][1000 genomes]
rs7711799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737877	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151651400-151657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:151651600-151653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:151651800-151653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:151651800-151656800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:151651800-151657200	Weak transcription	Aorta	Aorta
6	chr5:151653400-151654200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:151653400-151654200	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links