Variant report

Variant	rs73801377
Chromosome Location	chr4:20098228-20098229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002502	1.00[EUR][1000 genomes]
rs12506960	0.87[AFR][1000 genomes]
rs1385640	1.00[EUR][1000 genomes]
rs16869445	1.00[AMR][1000 genomes]
rs28515639	1.00[EUR][1000 genomes]
rs28704500	1.00[EUR][1000 genomes]
rs55809820	1.00[AMR][1000 genomes]
rs55844402	1.00[AMR][1000 genomes]
rs57330880	1.00[EUR][1000 genomes]
rs57770548	1.00[AMR][1000 genomes]
rs59109013	1.00[AMR][1000 genomes]
rs59532782	1.00[EUR][1000 genomes]
rs59715782	1.00[AMR][1000 genomes]
rs60036988	1.00[AMR][1000 genomes]
rs61076053	1.00[AMR][1000 genomes]
rs73801487	1.00[AMR][1000 genomes]
rs73803258	1.00[AMR][1000 genomes]
rs73803267	1.00[EUR][1000 genomes]
rs73803268	1.00[AMR][1000 genomes]
rs73803269	1.00[AMR][1000 genomes]
rs73803277	1.00[AMR][1000 genomes]
rs73803291	1.00[AMR][1000 genomes]
rs73803834	1.00[AMR][1000 genomes]
rs73803836	1.00[AMR][1000 genomes]
rs73803837	1.00[AMR][1000 genomes]
rs73803848	1.00[AMR][1000 genomes]
rs9990573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20097400-20099000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:20098200-20099800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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