Variant report

Variant	rs73803834
Chromosome Location	chr4:20268696-20268697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20264521..20266805-chr4:20268448..20270041,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869445	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55809820	1.00[AMR][1000 genomes]
rs55844402	1.00[AMR][1000 genomes]
rs57770548	1.00[AMR][1000 genomes]
rs59109013	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59715782	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60036988	1.00[AMR][1000 genomes]
rs61076053	1.00[AMR][1000 genomes]
rs73801377	1.00[AMR][1000 genomes]
rs73801487	1.00[AMR][1000 genomes]
rs73803258	1.00[AMR][1000 genomes]
rs73803268	1.00[AMR][1000 genomes]
rs73803269	1.00[AMR][1000 genomes]
rs73803277	1.00[AMR][1000 genomes]
rs73803291	1.00[AMR][1000 genomes]
rs73803836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73803837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73803848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878736	chr4:20233035-20279858	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878737	chr4:20233035-20282334	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv461287	chr4:20261786-20292239	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv593791	chr4:20261786-20292239	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20258000-20275400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20258200-20299400	Weak transcription	Fetal Stomach	stomach
3	chr4:20258400-20274000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:20259000-20269600	Weak transcription	HUVEC	blood vessel
5	chr4:20260000-20273600	Weak transcription	Fetal Kidney	kidney
6	chr4:20260000-20273800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:20260000-20276200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:20261800-20273200	Weak transcription	NHLF	lung
9	chr4:20263000-20272000	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:20264800-20273800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:20266000-20270000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:20266200-20269000	Enhancers	NHEK	skin
13	chr4:20267600-20269200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:20267600-20269600	Enhancers	Osteobl	bone
15	chr4:20267800-20268800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:20268000-20268800	Enhancers	Brain Anterior Caudate	brain
17	chr4:20268000-20268800	Enhancers	Brain Germinal Matrix	brain
18	chr4:20268000-20268800	Enhancers	Fetal Brain Male	brain
19	chr4:20268000-20269800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:20268000-20270400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:20268200-20268800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:20268400-20268800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr4:20268600-20269200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:20268600-20269400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:20268600-20269800	Weak transcription	NHDF-Ad	bronchial
26	chr4:20268600-20270400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:20268600-20270400	Weak transcription	Fetal Lung	lung
28	chr4:20268600-20271200	Weak transcription	Aorta	Aorta
29	chr4:20268600-20271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:20268600-20273600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:20268600-20280000	Weak transcription	Placenta Amnion	Placenta Amnion

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