Variant report

Variant	rs73811332
Chromosome Location	chr5:179675726-179675727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179675041..179677707-chr5:179682161..179684985,2	K562	blood:
2	chr5:179673735..179676191-chr5:179686105..179688393,2	MCF-7	breast:
3	chr5:179668812..179671072-chr5:179675335..179678649,3	MCF-7	breast:
4	chr5:179670436..179673688-chr5:179675507..179679295,5	K562	blood:

Variant related genes	Relation type
ENSG00000050748	Chromatin interaction
ENSG00000253908	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55696769	1.00[AFR][1000 genomes]
rs56179833	1.00[AFR][1000 genomes]
rs56942689	1.00[AFR][1000 genomes]
rs73811310	1.00[AFR][1000 genomes]
rs73811314	1.00[AFR][1000 genomes]
rs73811316	1.00[AFR][1000 genomes]
rs73811337	1.00[AFR][1000 genomes]
rs73811347	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179651600-179678000	Weak transcription	Fetal Heart	heart
2	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:179655000-179679600	Weak transcription	Stomach Mucosa	stomach
4	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
5	chr5:179656600-179703000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr5:179657800-179697000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:179658400-179679200	Strong transcription	Primary T cells from cord blood	blood
8	chr5:179658800-179680400	Weak transcription	Fetal Kidney	kidney
9	chr5:179659000-179677600	Strong transcription	Dnd41	blood
10	chr5:179660200-179679800	Weak transcription	HUVEC	blood vessel
11	chr5:179660400-179677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:179660800-179706800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:179664400-179677000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:179665800-179696600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:179666000-179697000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr5:179668000-179678400	Weak transcription	Brain Substantia Nigra	brain
17	chr5:179668200-179696800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
18	chr5:179669400-179676000	Weak transcription	Psoas Muscle	Psoas
19	chr5:179669400-179683600	Weak transcription	K562	blood
20	chr5:179669800-179678200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr5:179670200-179681600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:179670200-179712800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:179670400-179676200	Weak transcription	Fetal Brain Male	brain
24	chr5:179671200-179694000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
25	chr5:179672600-179677600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr5:179673000-179675800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:179673000-179677000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr5:179673200-179675800	Strong transcription	NH-A	brain
29	chr5:179673600-179675800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chr5:179673600-179676000	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr5:179673600-179676200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:179673600-179676200	Strong transcription	Brain Cingulate Gyrus	brain
33	chr5:179673600-179676200	Strong transcription	NHDF-Ad	bronchial
34	chr5:179673600-179676800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:179673600-179677000	Strong transcription	Fetal Lung	lung
36	chr5:179673600-179677200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr5:179673600-179677400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:179673600-179677600	Strong transcription	Brain Anterior Caudate	brain
39	chr5:179673600-179677600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr5:179673600-179677800	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:179673600-179678400	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr5:179673600-179691400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:179673600-179694800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr5:179673600-179695200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
45	chr5:179673600-179696600	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chr5:179673600-179697000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:179673600-179697000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr5:179673600-179701800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
49	chr5:179673600-179705400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:179673800-179677600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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