Variant report

Variant	rs73811347
Chromosome Location	chr5:179707657-179707658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:179707652..179710961-chr5:179712990..179716242,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55696769	1.00[AFR][1000 genomes]
rs56179833	1.00[AFR][1000 genomes]
rs56942689	1.00[AFR][1000 genomes]
rs73811310	1.00[AFR][1000 genomes]
rs73811314	1.00[AFR][1000 genomes]
rs73811316	1.00[AFR][1000 genomes]
rs73811332	1.00[AFR][1000 genomes]
rs73811337	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
3	chr5:179670200-179712800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:179692800-179718000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:179693800-179709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:179694800-179717600	Weak transcription	HUVEC	blood vessel
7	chr5:179696400-179714800	Weak transcription	Fetal Brain Male	brain
8	chr5:179697600-179710800	Strong transcription	Placenta	Placenta
9	chr5:179698400-179710200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:179698400-179710400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr5:179699000-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:179699600-179710600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr5:179699800-179711400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr5:179699800-179712600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:179700000-179711600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr5:179700200-179710800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:179700600-179712600	Strong transcription	Primary T cells from cord blood	blood
18	chr5:179700800-179711400	Strong transcription	Fetal Thymus	thymus
19	chr5:179701200-179710800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:179701400-179710600	Strong transcription	Fetal Intestine Large	intestine
21	chr5:179701600-179707800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:179701600-179708800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:179701600-179710600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr5:179701800-179710600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:179702200-179709600	Strong transcription	Left Ventricle	heart
26	chr5:179702400-179709000	Weak transcription	Fetal Heart	heart
27	chr5:179702400-179709400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:179702400-179714000	Strong transcription	Thymus	Thymus
29	chr5:179702600-179709600	Strong transcription	Fetal Stomach	stomach
30	chr5:179702600-179712200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:179702800-179708200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr5:179702800-179710600	Strong transcription	Hela-S3	cervix
33	chr5:179703000-179708400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:179703000-179711400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr5:179703000-179717400	Weak transcription	NHLF	lung
36	chr5:179703400-179714000	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:179703600-179709400	Strong transcription	Fetal Muscle Leg	muscle
38	chr5:179703800-179710800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:179703800-179714600	Strong transcription	Dnd41	blood
40	chr5:179704000-179707800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:179704000-179709800	Strong transcription	Brain Angular Gyrus	brain
42	chr5:179704000-179710200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr5:179704000-179710200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
44	chr5:179704000-179710600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr5:179704000-179711400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr5:179704000-179712600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
47	chr5:179704200-179708000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:179704200-179708400	Strong transcription	Osteobl	bone
49	chr5:179704200-179710600	Strong transcription	Fetal Brain Female	brain
50	chr5:179704200-179714200	Strong transcription	Stomach Smooth Muscle	stomach

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