Variant report

Variant	rs73811400
Chromosome Location	chr4:26889323-26889324
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10029307	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11729927	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11730235	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11734308	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11737218	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943948	0.94[ASN][1000 genomes]
rs12641261	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12644073	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12646473	0.97[ASN][1000 genomes]
rs12650172	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13116341	0.87[ASN][1000 genomes]
rs13138942	0.95[ASN][1000 genomes]
rs13139464	0.89[ASN][1000 genomes]
rs28497454	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28520489	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34996346	0.95[ASN][1000 genomes]
rs3792685	0.84[ASN][1000 genomes]
rs3924178	0.87[ASN][1000 genomes]
rs4274829	0.94[ASN][1000 genomes]
rs4407490	0.87[ASN][1000 genomes]
rs4505809	0.95[ASN][1000 genomes]
rs4519790	0.94[ASN][1000 genomes]
rs4532223	0.94[ASN][1000 genomes]
rs4557250	0.94[ASN][1000 genomes]
rs4557251	0.93[ASN][1000 genomes]
rs57663175	0.93[ASN][1000 genomes]
rs57686546	0.91[ASN][1000 genomes]
rs58075729	0.87[ASN][1000 genomes]
rs58968032	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60890366	0.89[ASN][1000 genomes]
rs61047003	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62302532	0.87[ASN][1000 genomes]
rs62302533	0.87[ASN][1000 genomes]
rs62302535	0.86[ASN][1000 genomes]
rs6448479	0.94[ASN][1000 genomes]
rs6448484	0.95[ASN][1000 genomes]
rs6448488	0.87[ASN][1000 genomes]
rs6815719	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6833053	0.99[ASN][1000 genomes]
rs6833895	0.94[ASN][1000 genomes]
rs6835631	0.89[ASN][1000 genomes]
rs6844153	0.89[ASN][1000 genomes]
rs6853032	0.94[ASN][1000 genomes]
rs73116683	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73813220	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7655686	0.94[ASN][1000 genomes]
rs9790789	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26875600-26904600	Weak transcription	Brain Anterior Caudate	brain
2	chr4:26880600-26902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:26880600-26921600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:26881800-26896200	Weak transcription	HMEC	breast
5	chr4:26882000-26897000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:26883400-26892800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:26885800-26890800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:26885800-26903600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:26886000-26894400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:26886000-26896200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:26886400-26890600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:26886600-26899400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:26886600-26921600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:26887000-26891000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:26887800-26889800	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr4:26888200-26889800	Enhancers	Primary hematopoietic stem cells	blood
17	chr4:26888200-26891600	Enhancers	Primary B cells from peripheral blood	blood
18	chr4:26888400-26889400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:26888400-26889400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:26888400-26891200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:26888400-26901600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:26888600-26890600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr4:26888600-26890800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:26888600-26891000	Weak transcription	Small Intestine	intestine
25	chr4:26888600-26899400	Weak transcription	Spleen	Spleen
26	chr4:26889000-26889800	Enhancers	K562	blood
27	chr4:26889200-26889400	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:26889200-26889400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr4:26889200-26889600	Enhancers	Primary B cells from cord blood	blood
30	chr4:26889200-26889800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:26889200-26889800	Enhancers	Dnd41	blood
32	chr4:26889200-26890000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr4:26889200-26890200	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr4:26889200-26890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:26889200-26890600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:26889200-26890600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:26889200-26890600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr4:26889200-26890600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:26889200-26890800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:26889200-26890800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr4:26889200-26890800	Weak transcription	Brain Substantia Nigra	brain
42	chr4:26889200-26891000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr4:26889200-26891000	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:26889200-26891400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr4:26889200-26891600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr4:26889200-26893000	Weak transcription	Thymus	Thymus
47	chr4:26889200-26893400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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