Variant report

Variant	rs73812545
Chromosome Location	chr4:31150236-31150237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11937701	1.00[EUR][1000 genomes]
rs11939049	1.00[EUR][1000 genomes]
rs12502649	1.00[EUR][1000 genomes]
rs12511624	1.00[EUR][1000 genomes]
rs12512723	1.00[EUR][1000 genomes]
rs12512727	1.00[EUR][1000 genomes]
rs55918443	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56225968	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56385830	1.00[EUR][1000 genomes]
rs56706315	1.00[EUR][1000 genomes]
rs59407249	1.00[EUR][1000 genomes]
rs60444821	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60915794	0.89[AFR][1000 genomes]
rs61138265	1.00[EUR][1000 genomes]
rs73113475	1.00[EUR][1000 genomes]
rs73113481	1.00[EUR][1000 genomes]
rs73113482	1.00[EUR][1000 genomes]
rs73812523	1.00[EUR][1000 genomes]
rs73812529	1.00[EUR][1000 genomes]
rs73812530	1.00[EUR][1000 genomes]
rs73812541	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73812546	1.00[EUR][1000 genomes]
rs73812557	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73812563	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31143000-31150400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:31143000-31151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:31145600-31154400	Weak transcription	Fetal Heart	heart
4	chr4:31146600-31150400	Weak transcription	Fetal Lung	lung
5	chr4:31147000-31150400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:31147800-31150600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:31148400-31150400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:31148400-31150400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:31148600-31150800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:31149200-31151800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:31149400-31150600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:31149400-31151400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:31149600-31151600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:31150000-31151600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:31150200-31151200	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links