Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:31171624-31171824	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000251182	TF binding region

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11937701	1.00[EUR][1000 genomes]
rs11939049	1.00[EUR][1000 genomes]
rs12502649	1.00[EUR][1000 genomes]
rs12511624	1.00[EUR][1000 genomes]
rs12512723	1.00[EUR][1000 genomes]
rs12512727	1.00[EUR][1000 genomes]
rs55918443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56225968	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56385830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56706315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59407249	1.00[EUR][1000 genomes]
rs60444821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60915794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61138265	1.00[EUR][1000 genomes]
rs73113475	1.00[EUR][1000 genomes]
rs73113481	1.00[EUR][1000 genomes]
rs73113482	1.00[EUR][1000 genomes]
rs73812523	1.00[EUR][1000 genomes]
rs73812529	1.00[EUR][1000 genomes]
rs73812530	1.00[EUR][1000 genomes]
rs73812541	1.00[EUR][1000 genomes]
rs73812545	1.00[EUR][1000 genomes]
rs73812546	1.00[EUR][1000 genomes]
rs73812557	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31170800-31171800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:31171400-31172000	Enhancers	NHEK	skin
3	chr4:31171400-31172800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:31171600-31172000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:31171600-31172000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:31171600-31172200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:31171600-31172400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:31171600-31172400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:31171600-31172400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:31171600-31172400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:31171600-31172600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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