Variant report

Variant	rs73818421
Chromosome Location	chr4:55703484-55703485
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1472412	1.00[AMR][1000 genomes]
rs4466102	1.00[AMR][1000 genomes]
rs4864929	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864931	1.00[AMR][1000 genomes]
rs58915287	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73816498	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73818422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73818424	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73818436	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73818438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73818440	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1836939	chr4:55701134-55716601	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55698200-55703800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:55702000-55704200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:55702200-55704000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:55702600-55703600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:55703400-55703800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:55703400-55703800	Enhancers	Brain Anterior Caudate	brain
7	chr4:55703400-55704200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:55703400-55704200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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