Variant report

Variant	rs73818639
Chromosome Location	chr4:58023718-58023719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60694906	1.00[AFR][1000 genomes]
rs73818699	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1010053	chr4:57978944-58331324	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv594207	chr4:57987433-58098554	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:58020600-58025400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:58021000-58029000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:58021000-58029000	Weak transcription	NH-A	brain
4	chr4:58022400-58024400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:58022800-58024000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:58023000-58029200	Weak transcription	HMEC	breast
7	chr4:58023000-58029600	Weak transcription	NHEK	skin
8	chr4:58023200-58024400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:58023200-58024400	Enhancers	Brain Germinal Matrix	brain
10	chr4:58023200-58024600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:58023200-58024600	Enhancers	Brain Anterior Caudate	brain
12	chr4:58023200-58025200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:58023200-58025200	Enhancers	Brain Angular Gyrus	brain
14	chr4:58023200-58025200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr4:58023400-58023800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:58023400-58023800	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr4:58023400-58024600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:58023400-58025000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:58023400-58025200	Enhancers	Brain Cingulate Gyrus	brain
20	chr4:58023400-58028800	Weak transcription	Hela-S3	cervix
21	chr4:58023600-58024000	Enhancers	Fetal Brain Female	brain
22	chr4:58023600-58024400	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr4:58023600-58024400	Enhancers	Fetal Brain Male	brain
24	chr4:58023600-58024600	Weak transcription	A549	lung
25	chr4:58023600-58029800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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