Variant report

Variant	rs73818699
Chromosome Location	chr4:58035675-58035676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60694906	1.00[AFR][1000 genomes]
rs73818639	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1010053	chr4:57978944-58331324	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv594207	chr4:57987433-58098554	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1001702	chr4:58035352-58100571	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2755175	chr4:58035372-58081172	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:58034600-58036000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:58034600-58036000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:58034600-58036000	Enhancers	Brain Substantia Nigra	brain
4	chr4:58034600-58036200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:58034600-58036200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:58034600-58036600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:58034800-58035800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:58034800-58035800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:58034800-58036000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:58034800-58036000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:58034800-58036000	Enhancers	Fetal Muscle Leg	muscle
12	chr4:58035000-58035800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:58035200-58035800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:58035200-58036000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:58035200-58038000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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