Variant report

Variant	rs73821880
Chromosome Location	chr3:22347181-22347182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11915776	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11917426	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1406614	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1406615	0.85[ASN][1000 genomes]
rs2358584	0.84[ASN][1000 genomes]
rs2358586	0.82[ASN][1000 genomes]
rs28406195	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6786604	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7429312	0.91[ASN][1000 genomes]
rs7612198	0.91[ASN][1000 genomes]
rs7613705	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622018	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7627451	0.85[ASN][1000 genomes]
rs7631669	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7645253	0.91[ASN][1000 genomes]
rs9809134	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9809739	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9812295	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9821709	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9828769	0.81[AFR][1000 genomes]
rs9834280	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9846446	0.82[AFR][1000 genomes]
rs9846466	0.86[AFR][1000 genomes]
rs9856840	0.89[ASN][1000 genomes]
rs9861524	0.89[ASN][1000 genomes]
rs9871951	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9877061	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1010333	chr3:22085827-22356861	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536519	chr3:22085827-22356861	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv589938	chr3:22231144-22372453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv876622	chr3:22268417-22348144	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22347000-22347200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:22347000-22347400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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