Variant report

Variant	rs1406615
Chromosome Location	chr3:22307000-22307001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11915776	0.96[ASN][1000 genomes]
rs11917426	0.89[ASN][1000 genomes]
rs1406614	1.00[ASN][1000 genomes]
rs2358584	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358586	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28406195	0.96[ASN][1000 genomes]
rs6786604	0.98[ASN][1000 genomes]
rs721509	0.92[EUR][1000 genomes]
rs73821338	0.87[ASN][1000 genomes]
rs73821880	0.85[ASN][1000 genomes]
rs7429312	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7612198	0.89[ASN][1000 genomes]
rs7613705	0.93[ASN][1000 genomes]
rs7622018	0.98[ASN][1000 genomes]
rs7627451	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7631669	0.94[ASN][1000 genomes]
rs7645253	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9809134	0.92[ASN][1000 genomes]
rs9809739	0.84[ASN][1000 genomes]
rs9812295	0.98[ASN][1000 genomes]
rs9821709	0.94[ASN][1000 genomes]
rs9844409	0.87[ASN][1000 genomes]
rs9855004	0.89[ASN][1000 genomes]
rs9856840	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9861524	0.96[ASN][1000 genomes]
rs9871951	0.96[ASN][1000 genomes]
rs9877061	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1010333	chr3:22085827-22356861	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536519	chr3:22085827-22356861	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv589938	chr3:22231144-22372453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876622	chr3:22268417-22348144	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22306000-22307000	Weak transcription	NHLF	lung
2	chr3:22306000-22310800	Weak transcription	Fetal Lung	lung
3	chr3:22306000-22310800	Weak transcription	Fetal Stomach	stomach
4	chr3:22307000-22307200	Enhancers	NHLF	lung
5	chr3:22307000-22307400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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