Variant report

Variant	rs9844409
Chromosome Location	chr3:22285942-22285943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22282412..22284259-chr3:22284738..22287975,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11915776	0.87[ASN][1000 genomes]
rs11917426	0.81[ASN][1000 genomes]
rs1406614	0.87[ASN][1000 genomes]
rs1406615	0.87[ASN][1000 genomes]
rs1491879	0.86[EUR][1000 genomes]
rs1852567	0.86[EUR][1000 genomes]
rs2358584	0.85[ASN][1000 genomes]
rs2358586	0.83[ASN][1000 genomes]
rs28406195	0.82[ASN][1000 genomes]
rs28648055	0.86[EUR][1000 genomes]
rs56971194	0.86[EUR][1000 genomes]
rs57986611	0.86[EUR][1000 genomes]
rs6786604	0.85[ASN][1000 genomes]
rs73821338	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7429312	0.81[ASN][1000 genomes]
rs7612198	0.81[ASN][1000 genomes]
rs7613705	0.81[ASN][1000 genomes]
rs7622018	0.85[ASN][1000 genomes]
rs7631669	0.85[ASN][1000 genomes]
rs7645253	0.81[ASN][1000 genomes]
rs9809134	0.83[ASN][1000 genomes]
rs9812295	0.85[ASN][1000 genomes]
rs9821709	0.85[ASN][1000 genomes]
rs9841100	0.86[EUR][1000 genomes]
rs9855004	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9856478	0.86[EUR][1000 genomes]
rs9861524	0.82[ASN][1000 genomes]
rs9871951	0.87[ASN][1000 genomes]
rs9877061	0.85[ASN][1000 genomes]
rs9878468	0.86[EUR][1000 genomes]
rs9878658	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1010333	chr3:22085827-22356861	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536519	chr3:22085827-22356861	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv589938	chr3:22231144-22372453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3522264	chr3:22266497-22288869	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3522265	chr3:22266497-22288869	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv876622	chr3:22268417-22348144	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv3729	chr3:22270379-22288323	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv589939	chr3:22275178-22286262	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv980086	chr3:22277624-22286417	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3491842	chr3:22277729-22286886	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3491838	chr3:22277898-22287196	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv528001	chr3:22278497-22293609	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3491845	chr3:22278648-22287096	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3491843	chr3:22279152-22286493	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3463279	chr3:22279174-22286505	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3491839	chr3:22279177-22286525	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3491837	chr3:22279213-22286497	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3463278	chr3:22279227-22286498	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3491844	chr3:22279244-22286460	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3463280	chr3:22279323-22286418	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv498995	chr3:22279328-22286418	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3491846	chr3:22279332-22286418	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv10824	chr3:22279439-22286398	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv822036	chr3:22280381-22286377	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv514141	chr3:22280580-22286348	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv33430	chr3:22280610-22286192	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv589940	chr3:22280773-22286262	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22284600-22286200	Weak transcription	NHDF-Ad	bronchial
2	chr3:22285600-22287400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links