Variant report

Variant	rs73822335
Chromosome Location	chr3:28291107-28291108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28289544..28292097-chr3:28303157..28305509,2	MCF-7	breast:
2	chr3:28289132..28291586-chr3:28300746..28303472,2	K562	blood:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11916224	0.83[AMR][1000 genomes]
rs11918809	1.00[AMR][1000 genomes]
rs60023459	0.83[AMR][1000 genomes]
rs61588415	0.83[AMR][1000 genomes]
rs73822334	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73825125	0.83[AMR][1000 genomes]
rs73825129	0.83[AMR][1000 genomes]
rs73825132	0.83[AMR][1000 genomes]
rs73825133	0.83[AMR][1000 genomes]
rs73825137	0.83[AMR][1000 genomes]
rs73825138	0.83[AMR][1000 genomes]
rs7628073	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28283800-28311400	Weak transcription	Lung	lung
2	chr3:28284000-28304800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:28284000-28309600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:28284000-28313800	Weak transcription	Ovary	ovary
5	chr3:28284000-28317200	Weak transcription	Gastric	stomach
6	chr3:28284200-28292600	Weak transcription	Psoas Muscle	Psoas
7	chr3:28284200-28292800	Weak transcription	Small Intestine	intestine
8	chr3:28284400-28291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:28284400-28292200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:28284400-28293600	Weak transcription	Right Ventricle	heart
11	chr3:28284400-28305400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:28284400-28305800	Weak transcription	Hela-S3	cervix
13	chr3:28284400-28311000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:28284400-28312600	Weak transcription	Fetal Lung	lung
15	chr3:28284400-28321800	Weak transcription	NHLF	lung
16	chr3:28284600-28291600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:28284600-28292200	Weak transcription	NHEK	skin
18	chr3:28284600-28292400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:28284600-28293400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:28284600-28305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:28284600-28306000	Weak transcription	A549	lung
22	chr3:28284600-28307200	Weak transcription	Fetal Intestine Large	intestine
23	chr3:28284600-28311200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:28285200-28305200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:28285200-28305600	Weak transcription	Fetal Thymus	thymus
26	chr3:28285400-28294000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:28285600-28315400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:28285800-28305400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:28285800-28311000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:28286000-28292200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:28286000-28292600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:28286000-28294000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:28286000-28306000	Weak transcription	K562	blood
34	chr3:28286000-28307200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr3:28286200-28291400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:28286200-28294400	Weak transcription	Spleen	Spleen
37	chr3:28286400-28291200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr3:28287200-28304800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:28287600-28317000	Weak transcription	Pancreas	Pancrea
40	chr3:28288000-28293200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr3:28288200-28293600	Weak transcription	HepG2	liver
42	chr3:28288600-28293800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr3:28288600-28305200	Weak transcription	Liver	Liver
44	chr3:28288600-28311200	Weak transcription	Esophagus	oesophagus
45	chr3:28288800-28291400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr3:28289000-28292600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr3:28289200-28292000	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:28289200-28292200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:28289200-28292600	Weak transcription	Left Ventricle	heart
50	chr3:28289200-28293200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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