Variant report

Variant	rs73824419
Chromosome Location	chr4:75089904-75089905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75088731..75091267-chr4:75171967..75174863,2	K562	blood:
2	chr4:75085650..75087545-chr4:75089867..75092462,3	K562	blood:
3	chr4:75089767..75091947-chr4:75172992..75174863,2	K562	blood:

Variant related genes	Relation type
ENSG00000182585	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10518119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10938110	1.00[EUR][1000 genomes]
rs11942036	1.00[EUR][1000 genomes]
rs11946885	1.00[EUR][1000 genomes]
rs11947475	1.00[EUR][1000 genomes]
rs1440405	1.00[EUR][1000 genomes]
rs1440406	1.00[EUR][1000 genomes]
rs16850579	1.00[EUR][1000 genomes]
rs16850585	1.00[EUR][1000 genomes]
rs4694665	1.00[EUR][1000 genomes]
rs474734	1.00[EUR][1000 genomes]
rs479117	1.00[EUR][1000 genomes]
rs507061	1.00[EUR][1000 genomes]
rs522698	1.00[EUR][1000 genomes]
rs536780	1.00[EUR][1000 genomes]
rs552357	1.00[EUR][1000 genomes]
rs55946357	1.00[EUR][1000 genomes]
rs56000473	1.00[EUR][1000 genomes]
rs56006412	1.00[EUR][1000 genomes]
rs56236141	1.00[EUR][1000 genomes]
rs56896590	1.00[EUR][1000 genomes]
rs569187	1.00[EUR][1000 genomes]
rs569206	1.00[EUR][1000 genomes]
rs60336088	1.00[EUR][1000 genomes]
rs60633195	1.00[EUR][1000 genomes]
rs6833925	1.00[EUR][1000 genomes]
rs6841682	1.00[EUR][1000 genomes]
rs6850735	1.00[EUR][1000 genomes]
rs73824406	1.00[EUR][1000 genomes]
rs73824413	1.00[EUR][1000 genomes]
rs73824415	1.00[EUR][1000 genomes]
rs73824429	1.00[EUR][1000 genomes]
rs73827550	1.00[EUR][1000 genomes]
rs73827558	1.00[EUR][1000 genomes]
rs73827561	1.00[EUR][1000 genomes]
rs73827562	1.00[EUR][1000 genomes]
rs7681620	1.00[EUR][1000 genomes]
rs7687073	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv594683	chr4:75013441-75106485	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1013260	chr4:75013441-75121643	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1002907	chr4:75013441-75131443	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1004706	chr4:75014770-75121643	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv594684	chr4:75015750-75106485	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv437397	chr4:75077057-75095061	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75056800-75096600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:75064200-75096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:75067800-75097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:75068400-75093000	Weak transcription	Thymus	Thymus
5	chr4:75068400-75096600	Weak transcription	Adipose Nuclei	Adipose
6	chr4:75069600-75091000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:75071800-75096400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:75072200-75099200	Weak transcription	Ovary	ovary
9	chr4:75073000-75092400	Weak transcription	Primary B cells from cord blood	blood
10	chr4:75073800-75094400	Weak transcription	Brain Angular Gyrus	brain
11	chr4:75074600-75091200	Weak transcription	Liver	Liver
12	chr4:75075000-75095800	Weak transcription	Primary T cells from cord blood	blood
13	chr4:75080600-75109600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:75080800-75095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:75080800-75095400	Weak transcription	Fetal Thymus	thymus
16	chr4:75081000-75091200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:75081400-75091000	Weak transcription	Left Ventricle	heart
18	chr4:75084200-75096400	Weak transcription	GM12878-XiMat	blood
19	chr4:75085400-75102600	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:75085600-75091000	Weak transcription	Brain Anterior Caudate	brain
21	chr4:75085800-75094400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:75086000-75096400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:75086200-75117600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:75088600-75092600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:75088800-75091600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:75089200-75090800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:75089400-75090200	Enhancers	A549	lung
28	chr4:75089400-75090200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr4:75089400-75090200	Enhancers	NHEK	skin
30	chr4:75089400-75090600	Enhancers	Osteobl	bone
31	chr4:75089400-75090800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:75089600-75090000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:75089600-75090200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:75089600-75090200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:75089600-75090200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:75089600-75090200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:75089600-75090200	Enhancers	Hela-S3	cervix
38	chr4:75089600-75090200	Enhancers	NH-A	brain
39	chr4:75089600-75090400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr4:75089600-75090400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:75089600-75090400	Enhancers	NHLF	lung
42	chr4:75089600-75090600	Enhancers	NHDF-Ad	bronchial
43	chr4:75089800-75090200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:75089800-75090200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:75089800-75090200	Enhancers	HSMM	muscle
46	chr4:75089800-75090400	Enhancers	HMEC	breast
47	chr4:75089800-75090400	Enhancers	HSMMtube	muscle
48	chr4:75089800-75091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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