Variant report

Variant	rs60336088
Chromosome Location	chr4:75110008-75110009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:75108484..75110398-chr4:75159304..75161148,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10518119	1.00[EUR][1000 genomes]
rs10938110	1.00[EUR][1000 genomes]
rs11942036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11946885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11947475	1.00[EUR][1000 genomes]
rs1440405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1440406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16850579	1.00[EUR][1000 genomes]
rs16850585	1.00[EUR][1000 genomes]
rs4694665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs474734	1.00[EUR][1000 genomes]
rs479117	1.00[EUR][1000 genomes]
rs507061	1.00[EUR][1000 genomes]
rs522698	1.00[EUR][1000 genomes]
rs536780	1.00[EUR][1000 genomes]
rs552357	1.00[EUR][1000 genomes]
rs55946357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56000473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56006412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56236141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56896590	1.00[EUR][1000 genomes]
rs569187	1.00[EUR][1000 genomes]
rs569206	1.00[EUR][1000 genomes]
rs57935899	0.83[AFR][1000 genomes]
rs58250046	1.00[AMR][1000 genomes]
rs60633195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6833925	1.00[EUR][1000 genomes]
rs6841682	1.00[EUR][1000 genomes]
rs6850735	1.00[EUR][1000 genomes]
rs73824406	1.00[EUR][1000 genomes]
rs73824413	1.00[EUR][1000 genomes]
rs73824415	1.00[EUR][1000 genomes]
rs73824419	1.00[EUR][1000 genomes]
rs73824429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73824433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827562	1.00[EUR][1000 genomes]
rs7681620	1.00[EUR][1000 genomes]
rs7687073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685225	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1013260	chr4:75013441-75121643	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002907	chr4:75013441-75131443	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004706	chr4:75014770-75121643	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75086200-75117600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:75093000-75117400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:75097400-75117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:75101400-75117600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:75103800-75116400	Weak transcription	NHEK	skin
6	chr4:75109800-75116400	Weak transcription	Primary hematopoietic stem cells	blood

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