Variant report

Variant	rs9685225
Chromosome Location	chr4:75177310-75177311
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75163085..75164737-chr4:75175661..75178478,2	K562	blood:
2	chr4:75054682..75055658-chr4:75177289..75178153,3	MCF-7	breast:
3	chr4:75093827..75095059-chr4:75177130..75178054,11	MCF-7	breast:
4	chr4:75172915..75175028-chr4:75175459..75177707,2	MCF-7	breast:
5	chr4:75054854..75055674-chr4:75177116..75178350,7	MCF-7	breast:
6	chr4:75054653..75055732-chr4:75177181..75178135,3	K562	blood:
7	chr4:75094225..75095673-chr4:75176947..75177967,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182585	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11942036	1.00[AMR][1000 genomes]
rs11946885	1.00[AMR][1000 genomes]
rs1440405	1.00[AMR][1000 genomes]
rs1440406	1.00[AMR][1000 genomes]
rs1460005	1.00[EUR][1000 genomes]
rs16850793	1.00[EUR][1000 genomes]
rs16850798	1.00[EUR][1000 genomes]
rs16850813	1.00[EUR][1000 genomes]
rs16850818	1.00[EUR][1000 genomes]
rs16850842	1.00[EUR][1000 genomes]
rs16850845	1.00[EUR][1000 genomes]
rs16850847	1.00[EUR][1000 genomes]
rs16850852	1.00[EUR][1000 genomes]
rs16850933	1.00[EUR][1000 genomes]
rs16850945	1.00[EUR][1000 genomes]
rs1993664	1.00[EUR][1000 genomes]
rs4694665	1.00[AMR][1000 genomes]
rs55946357	1.00[AMR][1000 genomes]
rs56000473	1.00[AMR][1000 genomes]
rs56006412	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56192801	1.00[EUR][1000 genomes]
rs56236141	1.00[AMR][1000 genomes]
rs57516973	1.00[EUR][1000 genomes]
rs58215609	1.00[EUR][1000 genomes]
rs58250046	1.00[AMR][1000 genomes]
rs58398242	1.00[EUR][1000 genomes]
rs59142088	1.00[EUR][1000 genomes]
rs59172186	1.00[EUR][1000 genomes]
rs59175703	1.00[EUR][1000 genomes]
rs60181583	1.00[EUR][1000 genomes]
rs60336088	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60560556	1.00[EUR][1000 genomes]
rs60633195	1.00[AMR][1000 genomes]
rs61119489	1.00[EUR][1000 genomes]
rs6830535	1.00[EUR][1000 genomes]
rs6836879	1.00[EUR][1000 genomes]
rs725142	1.00[EUR][1000 genomes]
rs73824429	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73824433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73824435	1.00[EUR][1000 genomes]
rs73824446	1.00[EUR][1000 genomes]
rs73824447	1.00[EUR][1000 genomes]
rs73824448	1.00[EUR][1000 genomes]
rs73824449	1.00[EUR][1000 genomes]
rs73824453	1.00[EUR][1000 genomes]
rs73824457	1.00[EUR][1000 genomes]
rs73824458	1.00[EUR][1000 genomes]
rs73824469	1.00[EUR][1000 genomes]
rs73827550	1.00[AMR][1000 genomes]
rs73827558	1.00[AMR][1000 genomes]
rs73827561	1.00[AMR][1000 genomes]
rs7687073	1.00[AMR][1000 genomes]
rs922136	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75149800-75186200	Weak transcription	K562	blood
2	chr4:75174400-75177600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:75175000-75186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:75175400-75185600	Weak transcription	Osteobl	bone
5	chr4:75175600-75177400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:75175600-75177600	Transcr. at gene 5' and 3'	NHEK	skin
7	chr4:75175600-75180000	Weak transcription	GM12878-XiMat	blood
8	chr4:75175600-75186600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:75175600-75189000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:75175800-75180000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:75175800-75180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:75176600-75177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:75176600-75177600	Enhancers	Hela-S3	cervix
14	chr4:75176600-75178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:75176800-75177800	Enhancers	HMEC	breast
16	chr4:75176800-75186600	Weak transcription	Esophagus	oesophagus
17	chr4:75177000-75177800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:75177200-75177600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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